KEGG   Shewanella amazonensis: Sama_1229
Entry
Sama_1229         CDS       T00445                                 
Name
(GenBank) Uracil-DNA glycosylase
  KO
K03648  uracil-DNA glycosylase [EC:3.2.2.27]
Organism
saz  Shewanella amazonensis
Pathway
saz03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:saz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Sama_1229
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:saz03400]
    Sama_1229
Enzymes [BR:saz01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.27  uracil-DNA glycosylase
     Sama_1229
DNA repair and recombination proteins [BR:saz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Sama_1229
 Prokaryotic type
     Sama_1229
SSDB
Motif
Pfam: UDG Tox-HDC
Other DBs
NCBI-ProteinID: ABL99436
UniProt: A1S4Y0
Position
complement(1513527..1514183)
AA seq 218 aa
MDWQQLLGDEKRSAYFQDTLKYINERIRAGVTVYPAKADIFNAFRFTPLEQVKVVILGQD
PYHGPNQAHGLCFSVKSPCPPPPSLQNIFIELTNSIPGFIAPSHGDLTPWATQGVLLLNT
ILTVERGQAHSHAHLGWERFTDAVIRGISTHCHGVIFLLWGSHAGKKAGLIDGSRHRVLQ
APHPSPFSAHKGFFGCNHFAIANDMLRHQGKSPIEWQL
NT seq 657 nt   +upstreamnt  +downstreamnt
gtggactggcaacaacttcttggagacgaaaaacgctctgcgtacttccaggacaccctt
aagtacatcaatgagcgcatacgcgccggagtgaccgtctatccggccaaggccgatatc
ttcaatgcgtttcgatttactcctctggagcaggttaaggtggtgatattggggcaagat
ccttaccacggccccaatcaggcacacggtctgtgcttttcagtaaaatccccctgtcca
ccccctccctctctgcagaacatctttatcgagctcaccaattcaatcccgggctttatt
gccccttcccatggggacttaactccttgggcaactcaaggcgtgttgctactcaatact
atattgacagtggagcgcggacaggcacattcccacgcccacctgggctgggagcggttt
accgatgcagtaatacgtggcatcagtacccattgtcacggggtgatatttttgctttgg
ggcagccatgccggcaaaaaagcgggcttgattgacggcagcagacacagagtactgcaa
gcgccgcacccgtcaccgttctctgcacacaaaggcttttttggttgcaatcactttgcc
attgccaatgacatgctgagacatcagggcaaatctcccatagagtggcaactctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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