KEGG   Shewanella amazonensis: Sama_3250
Entry
Sama_3250         CDS       T00445                                 
Name
(GenBank) diaminopimelate decarboxylase
  KO
K01586  diaminopimelate decarboxylase [EC:4.1.1.20]
Organism
saz  Shewanella amazonensis
Pathway
saz00300  Lysine biosynthesis
saz00470  D-Amino acid metabolism
saz01100  Metabolic pathways
saz01110  Biosynthesis of secondary metabolites
saz01120  Microbial metabolism in diverse environments
saz01230  Biosynthesis of amino acids
Module
saz_M00016  Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:saz00001]
 09100 Metabolism
  09105 Amino acid metabolism
   00300 Lysine biosynthesis
    Sama_3250
  09106 Metabolism of other amino acids
   00470 D-Amino acid metabolism
    Sama_3250
Enzymes [BR:saz01000]
 4. Lyases
  4.1  Carbon-carbon lyases
   4.1.1  Carboxy-lyases
    4.1.1.20  diaminopimelate decarboxylase
     Sama_3250
SSDB
Motif
Pfam: Orn_Arg_deC_N Orn_DAP_Arg_deC Ala_racemase_N DUF1955
Other DBs
NCBI-ProteinID: ABM01453
UniProt: A1SAP6
Position
complement(3844347..3845591)
AA seq 414 aa
MDHFLYREERLFAEECDVAGLAAEHGTPLYVYSRATLERHWHAFDGAVASHPHLICYAVK
ANSNLAVLNVLARLGSGFDIVSGGELSRVLEAGGDPAKVVFSGVGKTVAEMELALNTGIM
CFNLESGAELELLNEVAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIPMEEAEA
LFARAAALPNLAVKGVDCHIGSQLTELKPFLDAMDRMLALIDRLAEQGIVIEHFDVGGGL
GVTYNGETPPHPDVYAAAILEKLNGRPLKLIFEPGRAIAANAGIFVTQVLYTKDNGDKRF
VIVDGAMNDLIRPSLYGAWQNIIPAVKTNEPTTRCDVVGPVCETGDFLGKDRELAAGSGD
LLVVRSAGAYGFTMASNYNTRPRAAELMVDGDKAYVVREREKLSQLWQGEQLLP
NT seq 1245 nt   +upstreamnt  +downstreamnt
ttggatcattttctctatcgtgaagagcggctgtttgccgaagagtgcgatgtggcaggt
ctcgcagccgaacatggcacgcccctgtacgtttattcccgtgccaccctcgaacgccac
tggcacgccttcgatggtgctgtagcgagccatccacacctgatttgctatgcggtaaaa
gctaactccaacctggcggtgctcaatgtgctggcccggcttggcagtggtttcgacatc
gtctccggtggtgaacttagccgcgtgctcgaagccggcggtgacccagccaaagtcgta
ttttccggggtgggcaaaaccgtggccgagatggagctggcgctcaataccggcattatg
tgctttaacctggaatccggcgccgagcttgagctcctgaatgaagtggctggtcgtctt
ggcaaggtggcgccagtgtcgctgcgtgttaaccccgatgtggacgcaggtacccatcct
tatatttctaccggcctgaaagaaaacaaattcggtattcccatggaggaggcggaggcc
ctgtttgcccgcgccgccgcgttgccgaatctggcagtgaagggggtggattgtcacatt
ggttcgcagctgaccgaactcaagcccttcctcgatgccatggaccgcatgctggcgttg
attgaccgtctggcagagcagggcattgtgattgaacacttcgatgtaggtggcggcctt
ggtgtgacctacaacggtgaaaccccgccgcatccggatgtgtatgccgctgcgattctt
gagaagctcaatggccgcccgcttaagctgattttcgagcccggccgtgccattgccgcc
aacgccggtatctttgttactcaggtgctttacaccaaggataatggcgacaaacgcttt
gtgattgtcgatggcgccatgaatgaccttatccgcccgtcgctttacggcgcctggcaa
aacatcattcctgcagtcaaaaccaatgagccgactacccgctgtgacgtggttggccct
gtgtgtgagaccggtgatttcctcggtaaagaccgtgagttggcggcgggcagtggcgat
cttctggtggtacgcagcgccggtgcctacggttttaccatggcgtcgaactacaatacc
cgcccccgcgccgctgagctgatggtcgatggcgacaaggcgtatgtggtgcgcgagcgg
gaaaaactcagtcagctctggcaaggagagcaactcctgccgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (10)   
   KEGG PATHWAY (6)   
   KEGG MODULE (4)   
Chemical substance (3)   
   KEGG COMPOUND (3)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

Download RDF
DBGET integrated database retrieval system