KEGG T01678: SBI

Streptomyces bingchenggensis: SBI_03296

Entry

SBI_03296         CDS       T01678

Name

(GenBank) DNA topoisomerase IV subunit B

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

sbh Streptomyces bingchenggensis

Brite

KEGG Orthology (KO) [BR:sbh00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sbh03032]
    SBI_03296
   03400 DNA repair and recombination proteins [BR:sbh03400]
    SBI_03296
Enzymes [BR:sbh01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     SBI_03296
DNA replication proteins [BR:sbh03032]
Prokaryotic type
  DNA Topoisomerases
   SBI_03296
DNA repair and recombination proteins [BR:sbh03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      SBI_03296

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c

Other DBs

NCBI-ProteinID:

ADI06417

UniProt:

D7C8M8

Position

complement(4283874..4286006)

AA seq 710 aa
MTADTSVPSTALLTGADRGGSNYTARHLLVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEI
IDNSVDEALGGYCDRIEVILHDDGSVEVRDNGRGIPVDVEPKTGLSGVEVVMTKLHAGGK
FGGGSYAASGGLHGVGASVVNALSSRLDVEVDRDAKTHSISFRRGVPGIFTESGPEAPFD
PSSGLLKGKRVPKTRTGTRIRYWADRQIFLKDAKLSLETLYARARQTAFLVPGLTLIVRD
ERTAEGRDGAEGPSEEIFRFDGGISEFCEYLAQDKAVCDVLRLSGQGTFKETVPVLDERG
HMTPTEVTRELGVDIALRWGTGYDSTTKSFVNIIATLKGGTHVSGFERSVTKTVNEVLRT
AKLLRVAEDDVVKDDAMEGLTAVVTVRLAEPQFEGQTKEVLGTSAASRIVANVVAKELKA
FLTSTKRDDKQQARAVLEKIVAAARTRIAARQHKEAQRRKTALESSSLPAKLADCRSDDV
DRSELFIVEGDSALGTAKLARNSEFQALLPIRGKILNVQKASVSDMLKNAECGSIIQVIG
AGSGRTFDIDQARYGKVIFLADADVDGAHIRILLLTLFQRYMRPMVEQGRVFSAVPPLHR
VELVNPKRGQDKYVYTYSDHELQETLLDLQRRNVRYKDGIQRYKGLGEMDADQLAETTMD
PRHRTLRRINISDLEAAEQVFDLLMGNEVAPRKEFITNSAATLDRSRIDA

NT seq 2133 nt +upstreamnt +downstreamnt
gtgaccgccgacacgtccgtgccgtccactgcgctgcttaccggagcagaccggggcggc
tccaactacaccgcgcggcacctgctcgtcctggaagggctcgaagcggtacgcaagcgc
cccggtatgtacatcggctccacggacagccgtggtctgatgcactgcctatgggagatc
atcgacaactccgtcgacgaggcgctgggcggctactgcgaccgcatcgaggtgatcctg
cacgacgacggctcggtggaggtgcgggacaacggccgcggcatcccggtcgacgtcgag
cccaagaccggcctgtccggcgtcgaggtcgtgatgaccaagctgcacgcgggcggtaag
ttcggcggcggctcgtacgcggcctccggcggtctgcacggcgtcggcgcctccgtggtg
aacgcgctgtcctcccggctcgacgtggaggtggaccgggacgccaagacccactcgatc
agcttccggcgcggcgtccccggcatcttcaccgaatcgggccccgaggcgcccttcgac
ccgtcgagcggcctcctcaagggcaagcgggtccccaagacccgcaccggcacccgcatc
cgctactgggcggaccggcagatcttcctcaaggacgccaagctctccctggagacgctg
tacgcgcgcgcccgccagacggccttcctggtgccgggcctgacgctgatcgtccgggac
gagcggaccgccgagggccgggacggcgccgaggggccctcggaggagatcttccggttc
gacggcggcatcagcgagttctgcgagtacctggcgcaggacaaggccgtctgcgatgtg
ctgcggctgtcggggcagggcaccttcaaggagaccgtcccggtcctggacgagcgcggc
catatgacgccgaccgaggtcacgcgcgagctcggtgtcgacatcgcgctgcgctggggc
accggctacgacagcaccacaaagtccttcgtcaacatcatcgccacccttaagggcggc
acccacgtctccggcttcgagcgctcggtgaccaagacggtcaacgaggtgctgcgcacc
gccaagctgctgcgtgtcgccgaggacgacgtcgtcaaggacgacgccatggaggggctc
accgcggtcgtgaccgtgcggctggcggagccgcagttcgaggggcagaccaaggaggtg
ctgggcacctcagcggcctcccggatcgtggcgaacgtggtggccaaggagctcaaggcg
tttctcacctccaccaagcgggacgataagcagcaggcccgcgccgtgctggagaagatc
gtggcggccgcccgtacccgcatcgcggcccgtcagcacaaggaggcgcagcgccgtaag
accgcgctggagtcctcctcgctgcccgcgaagctggccgactgccgcagcgatgacgtg
gaccgcagcgagctgttcatcgtcgagggcgactcggcgctcggcacggccaagctcgcc
cggaactccgagttccaggcgctgctgccgatccgcggcaagattctcaacgttcagaag
gcgtcggtctccgacatgctgaagaacgccgagtgcggttcgatcatccaggtcataggg
gccggctcgggccggacgttcgacatcgaccaggcccgctacggcaaggtgatcttcctc
gccgacgccgatgtggacggcgcccacatccgcatcctgctgctcacgctcttccagcgc
tatatgcggccgatggtcgagcaggggcgggtcttctcggccgtgccgcccctgcaccgg
gtcgagctggtcaaccccaagcggggccaggacaagtacgtctacacctactccgaccac
gagctccaggagacgctgctggacctccagcgccggaacgtgcgctacaaggacggcatc
cagcgctacaagggtctgggcgagatggacgccgaccagctcgcggagaccacgatggac
ccgcgccaccgcaccctgcggcggatcaacatcagcgacctggaggccgcggagcaggtg
ttcgacctgctcatgggcaacgaggtcgcgccccgtaaggagttcatcaccaactcggcg
gcgaccctggaccggtcgcgcatcgacgcctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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