KEGG   Streptomyces bingchenggensis: SBI_03368
Entry
SBI_03368         CDS       T01678                                 
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
sbh  Streptomyces bingchenggensis
Pathway
sbh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SBI_03368 (pnp)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbh03019]
    SBI_03368 (pnp)
   03016 Transfer RNA biogenesis [BR:sbh03016]
    SBI_03368 (pnp)
Enzymes [BR:sbh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     SBI_03368 (pnp)
Messenger RNA biogenesis [BR:sbh03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SBI_03368 (pnp)
Transfer RNA biogenesis [BR:sbh03016]
 Prokaryotic type
  tRNA degradation factors
   SBI_03368 (pnp)
SSDB
Motif
Pfam: RNase_PH PNPase S1 KH_1 RNase_PH_C DUF2017 KH_2 PCB_OB KhpA-B_KH
Other DBs
NCBI-ProteinID: ADI06489
UniProt: D7CAD2
Position
complement(4380858..4383110)
AA seq 750 aa
MENETHYAEAVIDNGAFGTRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQ
LDFFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQI
VETIMALNPDHLYDVVAINAASCSTQLAGLPFSGPIGGTRVALIRGQWVAFPTHSELEDA
VFDMVVAGRVLEDGDVAIMMVEAEATDKTIQLVKDGAEAPTEEVVAAGLEAAKPFIKVLC
KAQSDLAAKAAKPTGEFPIFLDYQDDVLEALTAAVRDELAQALTIAGKQERETELDRVKG
LAAEKLLPQFEGREKEISAAYRSLTKTLVRERVIKEKKRIDGRGVTDIRTLAAEVEAIPR
VHGSALFERGETQILGVTTLNMLRMEQQLDTLAPETRKRYMHNYNFPPYSTGETGRVGSP
KRREIGHGALAERALLPVLPSREDFPYAIRQVSEALSSNGSTSMGSVCASTMSLLNAGVP
LRAPVAGIAMGLISQEIDGETHYVTLTDILGAEDAFGDMDFKVAGTKTFVTALQLDTKLD
GIPASVLAAALKQARDARLHILDVMNEAIDVPDEMSPNAPRIITVKIPVDKIGEVIGPKG
KMINQIQEDTGADITIEDDGTIYIGAADGPAAEAARATINGIANPTMPEVGERYLGTVVK
TTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLKVGAKVQVEIAEIDQRGKLSL
IPVIEDEEGSDASKDEAKDAADSGSAPDAK
NT seq 2253 nt   +upstreamnt  +downstreamnt
gtggagaacgagacccactacgccgaggccgtcatcgacaatggcgccttcggcacccgc
accatccgtttcgagacgggccgcctggcccgtcaggccgccggctccgccgtggcctac
ctggacgacgacaccatggtgctgtcggccaccaccgcatccaagaaccccaaggaccag
ctggacttcttcccgctcacggtcgacgtcgaggagcggatgtacgccgccgggcgcatc
cccggctcgttcttccgtcgcgagggccgcccgtccgaggacgcgatcctcacctgccgc
ctgatcgaccgcccgctgcgcccgtccttcaagaagggcctgcgcaacgagatccagatc
gtcgagacgatcatggcgctcaaccccgaccacctctacgacgtggtcgcgatcaacgcc
gcctcctgctccacgcagctggccggcctgcccttctccgggccgatcggcggcacccgg
gtcgccctgatcaggggccagtgggtggccttcccgacccactccgagctcgaggacgcc
gtcttcgacatggtcgtggccggccgcgtcctggaggacggcgacgtcgcgatcatgatg
gtcgaggccgaggccaccgataagaccatccagctggtcaaggacggcgccgaggcgccg
accgaggaggtcgtggcagcgggcctcgaggccgcgaagcccttcatcaaggtgctctgc
aaggcccagtcggacctcgccgccaaggccgccaagcccaccggcgagttcccgatcttc
ctcgactaccaggacgacgtcctggaggcgctcaccgccgccgtccgcgacgagctcgcc
caggcgctgaccatcgcgggcaagcaggagcgcgagaccgagctggaccgcgtcaagggc
ctggccgccgagaagctgctgccgcagttcgaggggcgcgagaaggagatctccgccgcg
taccggtcgctgaccaagaccctggtccgcgagcgcgtgatcaaggagaagaagcgcatc
gacggccgcggtgtcacggacatccgtacgctggccgccgaggtcgaggcgatcccgcgg
gtccacggctcggcgctgttcgagcgcggcgagacccagatcctgggcgtcaccacgctg
aacatgctccgcatggagcagcagctggacacgctggcgcccgagacccgcaagcgctac
atgcacaactacaacttcccgccgtactccaccggcgagaccggccgcgtcggctccccg
aagcgccgcgagatcggccacggcgcgctggccgagcgggcgctgctcccggtgctgccg
tcccgcgaggacttcccgtacgccatccgccaggtctccgaggcgctcagctccaacggc
tcgacctccatggggtcggtctgcgcctcgaccatgtcgctgctgaacgccggtgtgccg
ctgagggccccggtcgccggtatcgccatgggcctgatctcccaggagatcgacggcgag
acccactacgtcaccctcaccgacatcctcggtgcggaggacgccttcggcgacatggac
ttcaaggtcgccggcaccaagacgttcgtgaccgccctccagctggacaccaagctggac
ggcatcccggcgtccgtgctggccgcggccctcaagcaggcccgcgacgcccggctgcac
atcctcgacgtgatgaacgaggccatcgacgtcccggacgagatgtcgccgaacgcgccg
cggatcatcaccgtcaagatcccggtggacaagatcggtgaggtcatcggccccaagggc
aagatgatcaaccagatccaggaggacaccggcgccgacatcaccatcgaggacgacggc
accatctacatcggtgccgccgacggcccggccgccgaggccgcccgcgccaccatcaac
ggcatcgccaacccgacgatgcccgaggtcggcgagcgctacctgggcacggtcgtgaag
accaccaccttcggtgccttcgtctccctgctcccgggcaaggacggcctgctgcacatc
tcgcagatccgcaagctcgccggcggcaagcgcgtggagaacgtcgaggacgtgctgaag
gtcggcgccaaggtccaggtcgagatcgccgagatcgaccagcgcggcaagctctcgctg
atccccgtcatcgaggacgaagagggctcggacgcgtcgaaggacgaagcgaaggacgcc
gccgacagcggctccgccccggacgccaagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system