KEGG   Sorghum bicolor (sorghum): 8055807
Entry
8055807           CDS       T01086                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 2
  KO
K03128  transcription initiation factor TFIID subunit 2
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    8055807
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:sbi01002]
    8055807
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sbi03021]
    8055807
   03036 Chromosome and associated proteins [BR:sbi03036]
    8055807
Peptidases and inhibitors [BR:sbi01002]
 Metallo peptidases
  Family M1
   8055807
Transcription machinery [BR:sbi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     8055807
   Coactivators
    SAGA/TFTC/STAGA complex
     8055807
Chromosome and associated proteins [BR:sbi03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    TFTC complex
     8055807
SSDB
Motif
Pfam: Peptidase_M1 Peptidase_M1_N HEAT_2
Other DBs
NCBI-GeneID: 8055807
NCBI-ProteinID: XP_002460197
Position
2:58730087..58752546
AA seq 1389 aa
MAKARKQKGDGGGAGAGATVLHQKLCLSIDMENQLIYGYTEIKVLLAENDTFALHADNMT
IRSILVDGETVEFDYSPHWKNESDQPNWSSISCLKTAADAACSTYTSSLNREATPNLIVS
SERSVKSMTEQQLDENSEKHEENSGRLEEHGAKPVQTSYDQILNGCNGSAVEEGIENSAV
EEGKEKEKEKEKEKEEENGNEKSKENGNESENEKVKNIKLFHIDYILEKAETGIHFVGNV
MHSSSQIRRAHCWFPCVDSSTQRCPFDLEFTVSTDFIAVSNGDLLYQVLSKEDPSKKTYV
YKLNTPVSAQWISLVVGPLEVLPDQNDINVSHICLSPALAKLQNTIACFHDAYRCYEDYL
AAPFPLGLYKQIFLPSEMTVLPASLGASTCIFSSDILHDEKVIDQIIGTRIKLAYALAKQ
WFGIYTSAEEPNDEWLLDGLAGFLTELFIKRYLGNNEARYRRFKANCTVCESDVSGATAL
SSTAASSDLYGTQTVGSYGKVRSLKAVAVLQMLEKQMGPDSFRKILQVIVAPNRASRTLS
TKEFRHLANKVGNLERPFLKEFFPRWVESCGCPIMRLGISYSKKRNMIELAVSRGCTAKA
TPDPDIHTNGDTREGDAGWPGMMSVRVHETDGAYDHPVLPMAGEALQVVEIQCHSRLAAK
RVWKKKNTKLDGSDDNIDASTQENRTSVDSPLLWIRVDPEMEYLAEIHFHQPVQMWINQL
EKDKDVISQSQAISVLEKLPQLSFAVINALNNFLNDTKAFWRVRIEAAYALAVTSSEATD
LAGLLHLVKFYKSRRFDADIGMPRPNDFHDVPEYFVLEAIPHAVALVRSSDKNSPKGAIE
FILQLLKYNDNNGNIYSDVYWLSAMVQAIGELEFGQQGMGFLSSLLKRIDRLLQFDNFMP
GYNGVLTVSCIRTLARIARRVSSSVCLDRICDLIAPFRDMDKPWKVRIEASRVLIDLELH
HKGLDAALLLFLKYVDEEKSLRGATKLAVHVLRICQASIVPYANDQINLTTLIGLLHLLA
GTKAYNNVFLRHHVFCILQVAAGRSPTLFGVPKIVTSPPVVKDICSDQHTKADSSIPQPS
KPQEPSTSTPSVREVLPTSGPTKDADNISNCSERRNVVKIRVKLTASSSKASDADHRGHS
HGGRNENEPGPCSSMSVDAPMVGAANEPLNVSNHNIEEQNSCHDRESRMSASVSNAKLMD
RHDINKELQCTADSRLDALPKDQFSPAVNPPEVLDKPGSQLEGVSTSYDGNQAPESVNGV
EMKERKKKDKKDKKRKRDEKRDKKDDPEYLEKKRLKKEKKKMEKELARKQLEGAGRAIPE
QRKTVKPSGSQEVLPARPPAPVLSAEPAPVRSSEPQVSSKETTVDTARTAAKPRIKIKVK
PLVRKPEGN
NT seq 4170 nt   +upstreamnt  +downstreamnt
atggcgaaggcgaggaagcagaagggtgacggtggcggtgcgggcgcaggcgccaccgtg
ctccaccagaagctctgcctctccatcgacatggagaaccagctgatctacgggtacact
gagataaaagttcttctagctgaaaacgacacatttgctctacatgctgacaatatgaca
atcaggagcattctggtggatggtgaaactgttgagtttgactattcccctcattggaaa
aatgaaagtgatcaacctaattggtcttcaatatcatgtttgaagactgctgctgatgct
gcatgttcaacgtatacttcgtctctaaatcgagaagctacaccaaatcttattgtgtca
tctgagagatcagttaagtcaatgactgagcagcagttagatgaaaacagtgaaaagcat
gaagaaaacagtggaaggcttgaagaacatggtgcaaagcctgttcaaacttcctatgat
caaattcttaatggctgcaatggttctgcagttgaagagggaatagaaaattctgcggtg
gaagaaggaaaagaaaaagaaaaagaaaaggaaaaggaaaaggaagaggaaaatggaaat
gagaagagcaaggaaaatggaaatgagtctgaaaatgaaaaggtgaagaacataaaactg
tttcacatagattatattttggagaaggctgaaactggcattcacttcgttggcaatgtc
atgcatagtagcagtcagataaggcgcgcacactgttggtttccgtgtgttgatagttcc
acacaacgctgtccatttgacctagaatttacagttagcacagatttcatcgctgtcagc
aatggtgacttgctttaccaggtcttaagtaaggaagatccttcaaaaaaaacttatgtg
tataaattgaacactccagttagtgcacagtggatatccttggttgttggtccgcttgaa
gttctccctgaccaaaatgacataaatgtctcacacatctgtttatcccctgctttggca
aagcttcagaacactattgcatgtttccatgatgcatacaggtgttatgaagactatctt
gctgcaccgtttcccttaggtttatacaagcagatttttcttccatctgaaatgactgta
ttaccagcaagcttaggagcctccacatgcatcttcagttctgatatcttgcatgatgag
aaggttatagatcagataattggcacaagaatcaaactggcttatgcccttgcaaagcaa
tggtttggaatatacacaagtgcagaggagcccaatgacgaatggctgttggatggtttg
gctggttttcttactgagttatttatcaagcgttaccttgggaataacgaggcgcgttat
aggcgtttcaaggctaactgcacagtatgtgagtctgatgttagtggtgcaactgctttg
agttctactgctgcttcaagtgatttatatggaactcaaacagtcggttcatatgggaaa
gttcgatcattgaaagctgtagctgttcttcaaatgttggaaaaacagatggggccagac
tcctttcggaagattctgcaggtgatagtggctccaaatcgtgcctctagaacacttagt
acgaaagagttcagacaccttgcaaataaggttggtaaccttgaacgcccattcctgaaa
gaattttttccacggtgggttgaatcttgtggatgtccaattatgagattgggaatttca
tatagcaaaaaacggaatatgattgaattagccgtttcaaggggttgcacagcaaaagct
acacccgatcctgatattcacaccaatggtgacactagagaaggcgatgctggatggcca
ggaatgatgagtgtacgtgttcatgagactgatggagcgtatgatcatccagttctgcca
atggctggtgaagctttgcaggtggtggaaatacagtgtcattccagactagcagcaaag
cgcgtttggaagaaaaagaacacaaaacttgatggttctgatgacaacatagatgcctct
actcaagagaaccgcacaagtgtggattcacctttgttgtggattagagtagacccggag
atggaataccttgctgagatccattttcaccagccagttcagatgtggatcaatcagttg
gagaaagacaaagatgttatatctcaatcgcaggcaatatctgtcctggagaaattacct
cagctgtcttttgctgtgattaatgccctcaataatttcctaaatgacacaaaggccttc
tggagagttagaattgaagcagcatatgcactagctgttacatcatctgaggcaactgat
ttagctgggttgcttcatctggttaagttctataaaagccgccgctttgatgcagatatt
ggaatgcccaggccaaacgactttcatgatgtcccagagtactttgttcttgaggcaatc
ccccatgcggtagctcttgttagatcatcggacaagaatagcccaaaaggagccattgag
tttattcttcagctactgaagtacaatgataacaacgggaatatttactctgatgtgtac
tggctatctgcaatggtccaggcaataggcgaactggaatttggccagcagggcatgggc
ttcctatcctcccttctcaagcgaattgatcggctcttgcaatttgacaactttatgcct
ggttataacggggtcttgactgtcagctgcattcgtacccttgcacgaatagctaggagg
gtgtcatcttctgtctgtcttgatcgcatttgtgatttgattgcccctttccgtgacatg
gacaaaccatggaaagttcgaattgaagctagcagggttcttattgatcttgagttacac
cataaaggacttgatgcagctcttttgttgttcttgaaatatgtagatgaagaaaagtct
ttgcgaggagcaacaaagttggctgttcatgtcttgcgtatatgtcaagcaagtattgtt
ccttacgccaatgatcaaataaatttgacaactctaatcggtcttcttcatctgcttgct
ggcacaaaggcatacaataacgtatttcttcgtcatcatgtgttctgtatattgcaagtt
gccgctggaaggtccccaacattatttggtgttccaaagatcgtcacatcccctccggtg
gtcaaggacatatgtagtgatcagcacactaaagctgattcctcgattcctcagccatca
aagcctcaggaaccttccactagcactcctagtgtccgggaggtcttacctacgtctgga
cctactaaagatgctgataatatatctaactgcagcgaaagaaggaatgtggtcaaaatt
agggtgaagcttactgcgtcttccagtaaagcatctgatgctgaccacagaggccattct
catggtggaagaaatgaaaatgaaccaggtccatgtagctcaatgtcagtggatgccccc
atggttggggcagcaaatgaaccattaaatgtaagcaatcataacattgaggaacagaac
tcatgtcatgaccgtgaatcaaggatgtccgcaagtgttagcaatgctaagctaatggac
aggcatgacattaacaaggagctacagtgtactgctgattcaaggctggatgctcttccc
aaggatcagttctctcctgccgttaatccgccagaagttttagacaagcctggcagtcag
cttgaaggtgtctccaccagctatgatggaaaccaagctccagaatctgtgaacggagtg
gaaatgaaagagagaaagaaaaaagacaagaaagataaaaagcggaaacgtgatgaaaaa
cgagataagaaagatgacccagagtatctagagaaaaagcgacttaagaaggagaagaag
aaaatggagaaagagttggccagaaagcagctagagggtgcaggaagagctatccctgaa
cagcggaaaacagtgaaaccttcaggttcacaggaagttttgcctgcaaggccaccagct
ccagtgctaagtgctgaaccagctcctgttcggagctctgaacctcaggtatcaagcaag
gaaacaactgtagatactgcacgtacagcagccaaaccacggataaagatcaaagtcaag
cccttggtaagaaaacctgaagggaactag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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