KEGG   Sorghum bicolor (sorghum): 8060089
Entry
8060089           CDS       T01086                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 12b isoform X1
  KO
K03126  transcription initiation factor TFIID subunit 12
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    8060089
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sbi03021]
    8060089
   03036 Chromosome and associated proteins [BR:sbi03036]
    8060089
Transcription machinery [BR:sbi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     8060089
   Coactivators
    SAGA/TFTC/STAGA complex
     8060089
Chromosome and associated proteins [BR:sbi03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     8060089
    STAGA complex
     8060089
    TFTC complex
     8060089
    SAGA complex
     8060089
    SLIK complex
     8060089
SSDB
Motif
Pfam: TFIID_20kDa CBFD_NFYB_HMF HNOB
Other DBs
NCBI-GeneID: 8060089
NCBI-ProteinID: XP_002458756
UniProt: A0A921RI74 C5XPR9
Position
3:complement(67376600..67381828)
AA seq 554 aa
MADPPPVAASASPAQPDQLAATAASVSTPQNPNPNPLLSPQIPPSPTVSDLSAHISSPQQ
LDQAAAAASGGGGSMDYPPRPPQLQAPSPTQAGAGAAGFGQIPRSGSASRLSTASQLQQY
AAARMYGGQMSFSGGGGLVGQQQQQQLAGRAPMLGQGQLGMLQGQGNAASAAHFGLQSQM
MAQARQKGMAQGTQLNNANTAQALQGMQPMGVMGTMGMNQMRPNGTIPYGAQQRFAHAQM
RPQASQQPALSPQKVPGQGLSRTASITALNSQLSGSSQNGQMVAMSVPQQQQQQWLKQMQ
SSMGSPVSPQQQYQHQQRLLLMQQLQQKTGLSQQQLLQVQQQHPHLSAQQLIQQQHFLQQ
LQQQQPLQSPRVSASGSQKSANLTGSQPGTPLSVGTMTGGSASQGAEGTSQLLGKRKIQD
LVAQVDPLGKVDPEVEDLLLEIADDFIDSVTAFACTLAKHRKSSVVEAKDVLLHLERNWH
LSVPGFSREDKNPQRNSVKPLVDPQQSESDATGIRGTSNKLGANNSVGNHQIRPPMAEPS
AMPTVGPLSKAPRF
NT seq 1665 nt   +upstreamnt  +downstreamnt
atggcggatccgccgcccgtggccgcctccgcctcgccggcgcagcccgaccagctcgcg
gccacggcggcctccgtgtccaccccgcagaaccccaaccctaaccccctcctctccccg
caaatccccccgtccccgaccgtctccgacctctccgcgcacatctcgtccccgcagcag
ctcgaccaggcggccgctgccgcttcgggcggcggaggatccatggattaccccccgcgc
ccgccgcagctgcaggcgccttcgcccacgcaggccggggccggcgccgccgggtttggc
cagatcccccgctcggggtcggcctcacgcctctccacggctagccagctccagcagtac
gcggcggctaggatgtacggcgggcagatgagcttctcgggtggcggagggctcgtgggc
cagcagcaacagcagcagctggcggggcgcgcccccatgcttgggcagggccagctgggg
atgctgcaaggccagggtaacgcggcatctgcggcacattttgggcttcagtcgcagatg
atggcgcaggccaggcagaagggcatggcacaaggcacacaattgaataatgctaataca
gctcaagcgctgcaagggatgcagcccatgggtgtcatgggtaccatggggatgaaccag
atgagaccgaatggaactattccctatggtgctcaacaaaggtttgctcatgcgcaaatg
aggccacaagcgtctcaacaacctgcactgtctccacagaaggtacctggtcaaggtctg
tcgaggaccgcgtctattacagcattaaattcacaactgtctggatcatcacaaaatgga
cagatggtggcaatgtctgtgcctcagcaacagcagcagcagtggttgaagcaaatgcaa
tcatccatgggctcaccagtttccccacagcaacaatatcagcaccagcagaggctcctg
ttgatgcagcaacttcagcagaagacaggattgagccaacagcaacttctccaagtccaa
caacagcatccacatctcagtgcccaacagctgattcagcagcaacattttctgcagcag
ttgcagcagcagcaaccgctacaatctccacgtgtttcagcatctggttcgcagaagtct
gcgaaccttacaggctcacaaccgggtacacctttgtcagttggaactatgactggtgga
agtgcaagtcagggagctgaaggaactagccaacttcttgggaaaagaaaaatacaagat
cttgttgcgcaggtagatcccctaggtaaagttgaccctgaagtggaggatttacttcta
gaaatcgctgatgacttcattgactcggtgactgcatttgcttgtaccttggcaaagcac
aggaaatcatcagttgttgaagccaaggatgtgttgctgcacttagaaagaaattggcat
ttatctgttcctggtttctcaagggaggataagaatcctcaaagaaattctgtaaagcca
ttggtagatccccaacaatcagaaagtgatgctactggtatcagaggcacaagcaataaa
cttggtgctaataattcggttggcaaccatcaaatacgacctccgatggcagaaccttca
gcaatgccaacagtgggccctctatcgaaagccccccgcttctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (20)   

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