KEGG   Sorghum bicolor (sorghum): 8060457
Entry
8060457           CDS       T01086                                 
Name
(RefSeq) nuclear poly(A) polymerase 4
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    8060457
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8060457
Enzymes [BR:sbi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     8060457
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     8060457
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 Nrap_D2
Other DBs
NCBI-GeneID: 8060457
NCBI-ProteinID: XP_002447008
Position
6:54858680..54860326
AA seq 548 aa
MAMASSQPKQQMFGEPISLVGPTPADLEATAELEKVLREAGMYESPQESAVRAEVLRDLQ
GIVDRWVKQLTLKHGYPDAMVDEATALLLPFGSYRLGVHGGGSDIDALVVGPSFVDRDQD
FFGVLAGALAEATEAVTDLQPVPGAHVPVMKLRFRGVQVDLVYASVNLPVVPRDLDLSDR
AVLRGLDHVTARSMNGVRVADEILRLVPDAAAFRTALRCVKLWAKARGVYSNVSGFLGGV
AWAILVARVCQLYPNAAPSMLVSRFFKVLSQWKWPTPVMLCDIEHDDELGLPVWDGRRNP
RDRTHLMPVITPAYPCMNCTYNVSQATQRIIKEQIQAGHVACQEIAAGGDRGWGALFQPF
PFFRTHKSYLQVDATVAGGEEELREWKGWVESRLRQLVAKVERDTFGELLCHQNPRAYDA
EPHGLRCASSFFVGLSKPQQQRQQPSPPQGQQPQFDLRATADEFLQDVYTYRFWRPGLEL
AVKHVRRKDLPPYVMHKIRGPNIHELKRKRDDDDSSPSSPTLCSSSSASSCDDDSVRRPS
SRARLHPT
NT seq 1647 nt   +upstreamnt  +downstreamnt
atggccatggcttcttcccagccgaagcagcagatgttcggcgagcccatctctctggtt
ggcccgacgccggccgacctcgaggccacggcggagctggagaaggtcctgcgcgaagcg
ggaatgtacgagagcccccaggagtcggctgtccgcgccgaggtgctgcgcgacctccag
ggcatcgtcgaccgctgggtgaagcagctcacgctcaagcatgggtaccccgacgccatg
gtcgacgaggccaccgccctgctgctccccttcggatcctaccgcctcggcgtccacggc
ggcggctccgacatcgacgcgctcgtcgtcggtccctccttcgtggaccgcgaccaagac
ttcttcggtgtgctggccggcgcgctggccgaggcgacggaggccgtgacggacctgcag
cccgtgcccggcgcgcacgtccccgtcatgaagcttaggttccgcggcgtgcaggtggac
ctcgtctacgccagcgtcaacctccccgtggtgccccgggacctggatctgagcgaccgc
gccgtgctccgcggcctggaccacgtcaccgcccgcagcatgaacggcgtgcgcgtggcc
gacgagatcctgcggctggtccccgacgccgccgcgttccgcacggcgctgcggtgcgtg
aagctgtgggccaaggcgcggggcgtctactccaacgtgtccggcttcctcggcggcgtg
gcctgggccatcctggtggcgcgcgtgtgccagctctaccccaacgccgcgcccagcatg
ctggtgtcgcgcttcttcaaggtgctcagccagtggaagtggcccaccccggtgatgctc
tgcgacatcgagcacgacgacgagcttggcctccccgtctgggacgggcggaggaacccg
cgcgaccggacgcacctcatgcctgtcatcacgccggcgtacccgtgcatgaactgcacc
tacaacgtctcgcaggccacccagcggatcatcaaggagcagatccaggccggccacgtc
gcgtgccaggagatcgccgccggcggcgaccgcggctggggcgcgctgttccagccgttc
ccgttcttcaggacgcacaagagctacctgcaggtggacgcgacggtggcgggcggcgaa
gaagagctccgggagtggaaggggtgggtggagtcgcggctgcggcagctggtggccaag
gtcgagagggacacgttcggcgagctgctgtgccatcagaacccgcgcgcctacgacgcc
gagccacacggcttgcggtgcgcgtcgtccttcttcgtgggcttgtcgaagccacagcag
cagcgacagcagccatccccgccgcaagggcagcagccgcagtttgacctccgtgcgacg
gcggacgagttcctgcaggacgtctacacgtacaggttctggaggcccggcttggagttg
gccgtcaagcacgtccggcggaaggacctgccgccatacgtgatgcacaagattcgtggt
ccgaatatccatgagctcaagaggaagcgcgacgacgacgattcttcaccttcgtcgccg
acgttgtgttcgtcgtcatccgcctcctcttgtgacgatgactccgtccgaagacctagc
agcagggcaaggctgcatccaacatag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (17)   

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