KEGG   Sorghum bicolor (sorghum): 8061974
Entry
8061974           CDS       T01086                                 
Name
(RefSeq) nuclear poly(A) polymerase 4 isoform X1
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    8061974
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8061974
Enzymes [BR:sbi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     8061974
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     8061974
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 Nrap_D2
Other DBs
NCBI-GeneID: 8061974
NCBI-ProteinID: XP_002438573
Position
10:complement(49617091..49624079)
AA seq 695 aa
MASGSDPPKQYGITKPLSLLGPVEADLQRTAELEKFLVEAGLYESPDESARREEVLGKLD
QIVKDWVKQLTSQRGYTDQMVEEANAVLFTFGSYRLGVHGPGADIDTLCVGPSYVNREED
FFIVLHGILAQTEDVTELQPVPDAHVPVMKFKFHGISIDLLYASVSLLVVPADLDISQGS
VLYDVDEATVRSLNGCRVADQIIRLVPNIENFRTTLRCLKYWAKRRGVYSNVTGFLGGVN
WALLVARVCQLYPNAVPSMLVSRFFRVFTQWQWPNPVMLCSIEEDEVGFPVWDPRKNPRD
RCHHMPIITPAYPCMNSSYNVSTSTLRVMVEQFQFGNKICQEIEMNKASWSALFEPFQFF
EAYKNYLQVDIIAEDDEDLRLWKGWVESRLRQLTLKIERDTYGMLQCHPYPHEYADPSRQ
CAHCAFFMGLSRKEGVKIQEGQQFDIRGTVDEFRHDINLYMFWKPGMELAVSHVRRKQIP
AYVFPEGYKRPRPSRHVNHQSDKNDNEDGTVTQSPDSQLKRKHDSVGTDDIEPNRSAKRS
SVSPVHPKNSPQSGSTGDETRCNNQIKRAPSDASGGSPASPQASERSPDTIVSSPMCTTT
GAVCSGDAISKHGVPLVENCTTPTVAVCTTLKRVAEKVVSELVGSERLGSNNSAELLESM
EKDVLAENVCFGGNGVTQGGLPEELEPNLRIEVVS
NT seq 2088 nt   +upstreamnt  +downstreamnt
atggccagcggctctgatcccccgaaacagtacggaataaccaagccgttgtcattgctc
gggccggtggaggctgacctccagaggacggcggaactagagaagtttttggtcgaggcg
ggtctctatgagagccctgacgaatctgctaggcgggaggaggtgctggggaagcttgac
cagattgtaaaagactgggtgaagcaattgactagtcagagaggatacactgatcaaatg
gttgaagaggcaaatgctgtactcttcacctttggttcataccgtcttggggttcatgga
cctggagctgatattgatacactctgtgttggaccttcatatgtgaaccgtgaggaagat
ttttttattgtactgcatgggatattagcacaaacagaggatgtgaccgagctgcagcct
gtacctgatgcgcatgtccctgttatgaaatttaagttccatggaatatctattgacctt
ctttatgccagtgtctccctcttagtagtaccagctgacttggatatctctcaaggatca
gtcctttatgacgtcgatgaagctactgtccgtagtcttaatgggtgcagagttgcagac
caaattattagacttgttccaaatattgagaattttcgcacgacattaagatgtttgaag
tactgggcaaaaagaagaggtgtttactctaatgttaccggttttcttggtggtgtcaac
tgggctttactggttgcacgtgtctgccagctctatcccaatgctgtgccaagtatgctg
gtctcacggttttttagagtttttacacaatggcagtggccaaatccggttatgctttgt
tccatagaagaggatgaagttggtttccccgtttgggatccacgcaaaaatcctcgtgat
agatgtcatcatatgcccattataacccctgcatacccgtgcatgaactcgagctataat
gtttccacaagcacgctgagggttatggtggaacaattccagtttggtaataaaatttgc
caggaaattgaaatgaataaggccagctggtctgctctgtttgagccttttcaatttttc
gaagcatacaagaattatctacaggttgacatcatcgccgaggatgatgaagaccttaga
ctttggaaaggatgggttgaatctcgattgcggcaactaactttgaagattgaacgtgat
acatatggaatgctacagtgtcatccttacccacatgagtatgcagacccttctaggcag
tgtgctcattgtgctttcttcatgggcttatcaaggaaagaaggtgtgaaaatacaggaa
ggacaacagttcgatattcgtggaactgtggatgagtttaggcatgacatcaatttgtat
atgttctggaagcctggaatggagttagctgtttctcatgttcggaggaagcagatccca
gcttatgtgtttccagagggttataaaagacctcgcccttcaagacatgtgaaccatcag
tctgataaaaatgacaatgaagatggcacagtaacccagtctccggacagtcagctgaag
agaaagcatgattctgttggaactgatgatattgaacccaacaggtctgctaagaggtca
tcggtcagcccagttcatccaaaaaattcacctcaatctgggagcactggcgatgagact
agatgtaacaaccaaataaaaagggctcctagtgatgcaagtggtggcagtccggcttca
cctcaagcatcagagagaagcccagataccattgtgtcttcccctatgtgtacgacaaca
ggagcagtgtgttctggtgatgcaattagtaagcatggtgttcctcttgttgagaactgc
accactccaactgtagcagtgtgcacaactttgaagcgtgtagctgagaaagttgtatca
gagctagttggaagtgaaaggttggggagcaacaacagtgctgaattgctggagagtatg
gaaaaggatgttcttgctgaaaatgtttgttttggcgggaatggagttacacaaggtggc
cttccagaagagttagagccaaaccttaggattgaagtggtttcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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