KEGG   Sorghum bicolor (sorghum): 8071946
Entry
8071946           CDS       T01086                                 
Name
(RefSeq) replication factor C subunit 1 isoform X1
  KO
K10754  replication factor C subunit 1
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03030  DNA replication
sbi03410  Base excision repair
sbi03420  Nucleotide excision repair
sbi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    8071946
   03410 Base excision repair
    8071946
   03420 Nucleotide excision repair
    8071946
   03430 Mismatch repair
    8071946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sbi03032]
    8071946
   03400 DNA repair and recombination proteins [BR:sbi03400]
    8071946
DNA replication proteins [BR:sbi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    8071946
DNA repair and recombination proteins [BR:sbi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     8071946
SSDB
Motif
Pfam: RFC1 BRCT AAA Rad17 AAA_22 AAA_30 DNA_pol3_delta AAA_19 RuvB_N nSTAND3 AAA_assoc_2 PTCB-BRCT AAA_5 Gp44_lid BRCT_2 Zeta_toxin AAA_17 AAA_24 AAA_16 RsgA_GTPase AAA_18 Sigma54_activ_2 AAA_14 AAA_2 NTPase_1 Mg_chelatase AAA_33 TsaE RNA_helicase
Other DBs
NCBI-GeneID: 8071946
NCBI-ProteinID: XP_021317173
Position
5:63391809..63402025
AA seq 990 aa
MVHEDAGQERGGLWSRSGEAVRGGGSGREEEARAQHSREEVGAARIGWMLPPPLLVSCDH
DPPARRKTSKYFGSKGEKESDVEMADASAGKSADKSAAKRKLQKCNNELKEDSKPLPAKK
MSKDEEDDDDDFVAPPKKKTPVKPPPSKKAKVESNAQVDDAEDEDRMDEDAKTPSKGAGR
GRGRGGRGAGAGAATGGRGRGGGGRGFMNFGERKDPPHKGEKEVPEGAPDCLSGLTFVIS
GTLDSLEREEATDLIKRYGGRVTGSISKKTSYLLADEDIGGVKSNKAKDLGVPFLTEDGL
FDLIRKSKPAKAPVDKHQSNNSSEKLQKSLTKSSPAKVEKRAEASAVGKSIASNSNAASA
SADKQKPKNVDRGSMQWTEKYRPKVPNDIVGNQSMVKQLHDWLKSWDALFLHSGQKGKGK
KQTDSAAKKAVLLSGPPGIGKTTTAKVVSQMLGLQAIEVNASDSRGKADSKIEKGVGGST
SNSIKELISNATLNYGDNRSKHPKAVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICI
CNDRYSQKLKSLVNYCLMLNFRKPTKQQMGKRLMEIAKKEGIQAQENAMEELAERVHGDI
RMALNHLQYMSLSQSVVKYDDIRERLNSSSKDEDISPFTAVDKLFGFNGGRLRMDERIDF
GMSDPDLVPLIIQENYINYRPNTIGKDESGVKRMNALARAAESIADGDLVNVQIRRYRQW
QLSQAACFASSIVPAAWMHGNREILEAGERNFNRFGGWLGKYSTTNKNRRLLEDVHSHIL
ASQQANLDREALRLDYLTLILRELTDPLKKMSKDEAVQKVVEFMDTYSLSQEDFDTIVEV
SKFKGHPSPMDGIQPAVKSALTKAYKQGSSSRVVRAADLINIPGMKKPLKKRVAAILEPV
EESLPEENGASAEDDEDDSSDTENNDELVPANSTPKLDLQSDKKKGIQVQLDLKSNGNGS
GGKKAPAARSRVTGSGGKAAAGGSAGKRKR
NT seq 2973 nt   +upstreamnt  +downstreamnt
atggttcatgaagacgcaggacaagagcggggcggcctctggagccgcagcggcgaagcc
gtcaggggcggcggcagcggccgagaagaagaagcccgtgctcagcattcccgagaagaa
gtcggggccgcccgcattggttggatgctgcccccgccgttgttggtgtcctgtgatcat
gatcctcctgctagaaggaagacaagcaagtactttgggtcaaaaggagagaaggaatca
gatgttgaaatggcagacgcctctgccggaaagagtgctgacaagagtgcggctaaaaga
aaacttcagaaatgcaacaatgaacttaaggaggacagcaagcctttgccagcaaagaaa
atgtctaaggatgaagaagatgacgatgacgactttgtggcacctccaaagaagaaaact
ccagtgaagccaccgccttcaaaaaaggctaaagttgaatctaatgctcaagttgatgac
gctgaggatgaggacaggatggatgaagatgccaagaccccctcaaaaggagctggaaga
ggaaggggaaggggaggaagaggagcaggagcaggagctgccactgggggcagaggtaga
ggaggaggtgggagaggttttatgaattttggtgagaggaaagatcctcctcacaaagga
gaaaaggaggtcccagagggtgcccctgactgtttatctggtctgacatttgtcataagt
ggtacccttgacagtcttgaacgtgaggaagcaactgatctaattaagcgttatggtggc
cgtgtgactggctctattagtaaaaagacgagctacttactggctgacgaagacattggt
ggagttaaatctaacaaagcaaaagatctgggtgtcccattcttgactgaagatggttta
tttgatttgatccgaaaatcaaagcctgcaaaggctcctgtagacaaacatcaaagcaac
aacagttctgaaaagcttcagaaatcactgacaaagagctctccagctaaagttgaaaaa
cgagctgaggcaagtgctgtgggaaaaagtattgcttcaaatagtaatgctgcaagtgcc
tccgctgacaaacaaaagcccaagaatgttgaccgtggttctatgcaatggacagaaaaa
tatcggccaaaagttccaaatgacatagttggcaatcaatcaatggtcaaacaacttcat
gattggttgaaaagttgggatgcactattccttcattctggccaaaagggtaagggaaag
aaacaaactgacagtgcagccaaaaaggctgtgttgctgagtggacctcctggtattggt
aagactactactgctaaagttgttagtcagatgcttggactgcaggccattgaggtaaat
gcgagtgatagccgtggtaaggcagactccaagattgagaagggtgttggggggagtaca
tcaaattctatcaaagagcttatcagcaacgcgactctgaattatggtgacaatcggtca
aaacatcccaaagctgtactaatcatggatgaagttgacggtatgtctgctggagataga
ggtggtgttgctgatcttattgctagcatcaagatatccaagatccctattatctgcatt
tgtaatgaccgttatagccagaaattgaagagtcttgttaattactgcctgatgctcaac
ttcagaaaaccaacgaaacaacagatgggtaaaagattgatggaaattgccaaaaaggaa
ggtattcaagctcaagagaatgcaatggaagagcttgctgaaagagtgcacggagatatt
cgcatggcactcaaccatttgcagtatatgagcctctcccaatctgtggtcaaatacgat
gatataagggagcgacttaacagcagttcaaaggatgaagatatttctccttttactgct
gttgacaaactttttggtttcaatggtgggaggttaaggatggatgagagaattgatttt
ggcatgagcgatcctgatttagttcccttgattatccaggaaaattatatcaattatcgg
cctaacaccatcgggaaggatgaaagtggagttaaaagaatgaatgctctagcccgggct
gctgaatctatagcggacggtgatcttgttaatgtacaaataagaagatatcgacagtgg
cagttgtcgcaagctgcttgttttgcttcatctatagtacctgccgcttggatgcatggg
aacagagaaatccttgaagcgggtgagcggaattttaataggtttggtggatggttgggt
aagtactcaactactaacaaaaacagaaggctactggaagatgtccacagtcatattctt
gcctcccagcaagcaaacttggacagggaggcattgaggttggattatcttactcttatt
ttgagagagctgactgacccactgaaaaaaatgtcaaaggatgaagctgttcaaaaggtg
gtagagtttatggatacatactctttaagccaggaagacttcgacacgattgtggaagta
tccaaatttaagggtcatccaagtcctatggatgggattcaacctgctgttaaaagtgcc
ttgacaaaggcatacaaacaaggaagtagttctcgtgttgttcgagcagcagatctaata
aatattccaggcatgaaaaagccattaaagaaacgagtggctgcaatcttggagccagta
gaagagagcctgcctgaagaaaatggcgcatcagctgaagatgatgaagatgattcttct
gacactgaaaataatgatgaacttgtccctgctaactctacgccgaagctggacctgcaa
agtgacaagaagaaaggaattcaagtccagcttgacctgaagagcaatgggaatggctct
ggtgggaagaaggcgcctgccgccagatcaagagtgactgggtcaggtgggaaggccgcg
gcgggtggttcagctggtaagaggaagaggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (29)   
   Pfam (29)   
All databases (45)   

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