KEGG   Sorghum bicolor (sorghum): 8073075
Entry
8073075           CDS       T01086                                 
Name
(RefSeq) histone deacetylase 6
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03082  ATP-dependent chromatin remodeling
sbi03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    8073075
   03083 Polycomb repressive complex
    8073075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sbi03036]
    8073075
Enzymes [BR:sbi01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     8073075
Chromosome and associated proteins [BR:sbi03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     8073075
   HDAC complexes
    Sin3A-HDAC complex
     8073075
    BRAF-HDAC complex
     8073075
    REST complex
     8073075
    SHIP complex
     8073075
    MiDAC complex
     8073075
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     8073075
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    8073075
  Chromatin remodeling factors
   NuRD complex
    8073075
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 8073075
NCBI-ProteinID: XP_002444249
UniProt: A0A921QK19 C5YKG8
Position
7:47337650..47352155
AA seq 458 aa
MAASGEGASLPSPAGGEDAHRRRVSYFYEPSIGDYYYGQGHPMKPHRIRMAHSLVVHYGL
HRLLELSRPYPASEADIRRFHSDDYVAFLASATGNPSVLDPRAVKRFNVGEDCPVFDGLF
PFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKFH
RRVLYVDIDVHHGDGVEEAFFTTNRVMTVSFHKYGDFFPGTGHITDVGAAEGKHYALNVP
LSDGIDDATFRDLFQCIIKKVMEVYQPDVVVLQCGADSLAGDRLGCFNLSVKGHADCLRF
LRSYNVPMMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNDYYEYFGPDYILHIQP
KSVENQNTTKDLENIKNMILESLSKIEHVPSTQFHDRPSDPEAPEEKEEDMDKRPAQRSR
LWSGGAYDSDTEDPDNLKSESKDVTANLQMKDEPKNDL
NT seq 1377 nt   +upstreamnt  +downstreamnt
atggcggcctccggtgagggcgcgtcgctgccgtctccggcgggcggggaggatgcgcac
cgccgccgcgtgagctatttctacgagccgtcgatcggcgactactactacgggcaaggt
cacccgatgaagccccaccgcatccgcatggcgcactcgctggtggtccactacggcctc
caccgcctcctcgagctctcccgcccctacccggcctctgaggccgacatccgccgcttc
cactccgacgactacgtcgccttcctcgcgtccgccaccggaaaccccagtgtcctcgac
ccgcgcgccgttaagcgcttcaacgtcggtgaggactgccccgtgttcgacggtctcttc
cccttctgccaggcctccgcggggggaagcatcggcgccgccgtcaagctcaaccgcggg
gatgctgacatcaccgtcaactgggctggcggcctccaccacgccaagaagagcgaggcc
tccggtttctgctatgtcaacgacatcgtcctcgccatcctcgagctcctcaagttccac
aggcgtgtgctatatgtagacattgatgtccatcatggagatggcgtggaggaggccttc
ttcactacaaaccgagtcatgacagtttcttttcacaagtatggggattttttccctggt
actggacatatcactgatgttggggctgccgaggggaagcattatgctctgaatgttccc
ctgagtgatggtatcgatgatgccacctttcgtgatctgttccaatgcatcattaagaaa
gttatggaggtttatcagccagacgtggttgtcctccaatgcggagctgactctttggct
ggagacaggttaggttgcttcaacctgtctgtgaagggtcatgctgactgcctccggttt
cttaggtcgtacaatgttcctatgatggttttaggtggtggaggttacaccatcagaaac
gttgcacgctgctggtgctatgagaccgcagttgctgttggagttgaacctgataacaag
ctgccttacaatgattactatgaatactttggccctgattatattcttcatatccaacca
aaaagtgttgaaaaccagaatactacaaaggacttggagaacataaagaacatgatattg
gagagcctgtcaaagatagaacatgttcccagcactcaattccatgacaggccgtcagac
cctgaagctccagaggagaaagaggaggacatggataagaggccagctcagcgcagcaga
ttatggagcggaggagcttatgactctgatacagaggatcctgacaacctgaaaagtgag
agtaaagacgtaactgccaacttgcagatgaaggatgaaccaaaaaatgatctgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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