KEGG   Sorghum bicolor (sorghum): 8077525
Entry
8077525           CDS       T01086                                 
Name
(RefSeq) uncharacterized protein LOC8077525 isoform X1
  KO
K06100  symplekin
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    8077525
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sbi03021]
    8077525
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8077525
Transcription machinery [BR:sbi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     8077525
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     8077525
    U7-dependent histone pre-mRNA processing factors
     8077525
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N HEAT_2 HEAT HEAT_EZ Med28
Other DBs
NCBI-GeneID: 8077525
NCBI-ProteinID: XP_021310546
Position
2:77590090..77601280
AA seq 1243 aa
MLAARNPPPPPHDIAARLHHLRDLRRVPLPNRVARIADLHTDEASPVRKLVAEIIGELGS
KHMAYLPDMIPCLLHLLNDETPAVVRQAVKTGTNLFSKVLQKLVIQGLFSTGGIDDALKL
SWEWLLKFKSVVSHMAFQATGNEGVRLLAVKFVEKTVLMYTPDPNVPSDPPTETTEVMGF
NVAWLRAGGHPLLNVGDLAMEASQSLGLLLEQLKYPKVKSLSTSMIIVFITSLSAIAQTR
PSFYGRILPVLLSLDPASSIIKLRVPGAFHALKSAFSACLKCTHSSAEPWRERLLEAQNI
VNQGDSREDAANAAKNFGDTSNREESWLLMERSTDGSNKRSLAEDMNHMTEDDLHSPKRA
RQSFDANEHSEGANKRNVESTSVDISSSQPSSIRTGNSEAVYQLIGMFAALAAQGDRAAG
SLQILSSSIASDLLAEVVMVNMQHLPISRPEVDQQQLPSTSSGDGLPLSSFFSLLGTLLK
RANQIDQDEVSPTKESAVVSSVADDIMTVPASSPVPSSVNLPIEENTNSPTVPLCIETTE
AKVSSAGGNSSIDIPESSEASHASTELQGTQEHASTFVSSFPADNSSAGFSLAQSSETRS
PSSSTVEANHSQLSSLSSQYVLPKLVVNNIDLSDEAKDLLQKEAFVRILESDKQEASGGS
IARLPLLAHLGVEFPLELDPWEILQKHVLSDYANNEGHELTICILNRLYREAEQDQDFLS
STTATSVYESFLLNIAENLRDMFPASDKSLGKLLCEIPYLPEGVLKLLEGLCSPGSNEKQ
DKDIQSGDRVTQGLSAVWNLIMLRPSNRDRCLEIALQSSTHHLEEVRMKAIRLVANKLFP
MASISKKIEDFANEKLNSVLEVIPSGDSATTEMATPQAHKDVGLENLTAPVADAQTLMSL
YFALCTKKHSLLRHVFAIYGNLPQAAKQAVHRQVPILIRTIGSSSDLLGIISDPPADCWD
LLMQVLQTLTDAAVPSKDLISSIKILYSKTKDVEVLFAILAHLPKDEVLPVFPSIVNLPI
DKFQGAISRILQGSPRTGPSLDPSEILIAIHVIDPDKEGIPLKKVMDACSSCFEQRTIFT
QQVLAKALNQLVEQIPLPLLFMRTVMQAIGVFPALVDFVMEIMSRLVSKQIWKYPKLWVG
FLKCAILTKPQSYGVLLQLPAPQLENALSKNPTLKAPLAEHAEQPNIRSTLPRSTLVVLG
LAEDQPQQPAAAQAQSSQNQAVETSSSAADTATEVTQESSAAS
NT seq 3732 nt   +upstreamnt  +downstreamnt
atgctggccgcccggaacccccctccgccgccccatgacattgccgcgcgcctccaccac
ctgcgcgacctccgcagggtgccgctccccaaccgcgtcgcgcgcatcgccgacctccac
accgatgaggccagccccgtgcgcaagctggtcgccgagatcattggtgagcttgggtca
aaacacatggcgtatctacctgatatgatcccttgtttgctgcaccttctgaatgatgag
acacctgcagtcgtcaggcaagctgttaagacaggaaccaacttgttttccaaagtactc
caaaagctagttatccagggtttattctccactggagggattgatgatgcacttaaattg
tcatgggaatggcttctcaagttcaaatcagttgtctcgcacatggcatttcaggccacc
ggcaatgaaggtgtcaggttactggctgttaagtttgttgaaaaaacagttcttatgtac
acaccagatcctaatgtcccatctgatccgccaactgaaactacagaagttatgggattc
aatgtagcttggttacgagcaggaggtcaccctctgcttaatgttggggatctggccatg
gaagccagccagagtcttggattgttgctagagcaactcaagtatcctaaagtaaagtca
ctcagtacttccatgatcatcgtcttcattactagtctctcagctattgcccaaacaagg
ccttccttttatggacgcatactgccagttttactttccttggatccagcaagttctatt
attaaattgagagtcccgggtgcattccatgccttgaagagtgccttctccgcatgcctg
aaatgcacacattcaagtgctgagccgtggcgagaacggctattggaagctcaaaatatt
gtcaaccagggggattcaagagaagatgcagcaaatgctgctaagaattttggggacaca
tcaaacagggaagaatcgtggcttctgatggagagaagcactgacggtagtaacaagcgt
agtctggctgaagacatgaatcatatgacagaagatgatctccactcccctaaaagagcc
aggcaatcatttgatgctaatgaacacagtgaaggggcaaacaagagaaatgttgagtcg
acatctgttgatatctcatctagccagcccagctctataagaactgggaattcagaagct
gtgtatcaattaattggtatgtttgctgcactagctgcacaaggtgacagagcagctgga
tcactgcaaatcctttcgtccagtatcgctagtgacttactagcggaggtggtaatggtt
aacatgcaacatctcccaatttctcgtcctgaagttgaccaacagcagcttccttctacg
agctctggagatggacttccattatcaagtttcttctctctgttagggactctactgaag
agagcgaaccaaattgatcaagatgaagtgtctccaactaaagaatctgcggtggtgtca
tctgttgctgatgacatcatgacagttcctgctagttcacctgttcctagctcagtaaat
ctacctatcgaagagaacactaacagtccaacagttccattatgtatagaaacaacagag
gccaaagtaagcagtgcaggtggcaatagttcgattgatattccagaatcatcagaagct
tcccatgcctcaacagagctccagggaacccaagagcatgctagcacttttgtcagttca
tttcctgctgataattcctcagctgggtttagtttggcacaatcatcagaaactcgcagc
ccaagctcttctacagtggaagcaaaccactcgcaactttcatcccttagttcacaatat
gttcttccgaagttggttgtcaataatattgatctcagtgatgaggccaaagatctcctt
caaaaagaggcatttgtgcggattcttgagagtgataagcaagaagcatctggtggttca
attgctcgccttccgttgcttgctcacttgggtgtcgagtttcctctggaattggaccct
tgggagattctccaaaagcacgtgctctctgattatgcgaataatgaggggcacgagttg
actatatgcatcctgaaccggttatatcgtgaggcagagcaggatcaagattttctttca
tctacaactgctacatcagtttatgaatcctttcttctaaacatagctgaaaatcttcga
gacatgtttccagcttcagataagtcacttggcaaattgctttgtgagataccatactta
ccagaaggtgtgctgaaactgctcgaaggtttatgttctcctggaagtaatgagaagcag
gataaggatattcagagtggtgacagggtaactcaaggtctcagtgctgtctggaacctt
atcatgctaagaccttcaaatcgggacagatgtctggagattgctttgcagagttcaact
catcatctagaggaggtccgcatgaaggcaatacgtttggtggcaaataagttatttccc
atggcaagcatttccaaaaagattgaagattttgcaaatgaaaaactaaattcagtgctg
gaagtgattccatctggtgattctgcaactactgaaatggctacacctcaagcacacaaa
gatgttggtttggaaaacttaacagctccagtggcagacgcgcaaactctgatgtctcta
tactttgcattgtgcaccaagaaacattcccttctcagacatgtatttgcaatatatggt
aatctaccgcaagctgccaagcaggcagttcatcgacaagtaccaattctgatacgcaca
ataggctcctcctctgatcttcttgggatcatctcagatccaccagctgactgctgggac
ctcctcatgcaggttttacaaaccctcactgatgctgcggttccgtccaaagatctgatt
tcttccataaagatcttatattctaaaacaaaggatgttgaggtcctttttgcaatcttg
gctcatctaccaaaagatgaggttctgcctgtgttccccagtattgttaatcttccaata
gacaagtttcaaggtgccatttcccgaatcttgcagggatcacctcggactggcccttcg
cttgatccatcagaaattttaattgcaattcatgtaatagatcctgataaggaaggaata
ccactcaaaaaggttatggatgcatgctcttcttgctttgagcaaagaacaatatttacc
cagcaagttctggcaaaagcactaaatcaactggttgagcagattcctcttcctttgcta
ttcatgaggactgtcatgcaagcaataggtgtttttcctgcattggtggattttgtgatg
gagatcatgtcacgccttgtgagcaagcagatttggaaatatcccaagttatgggtagga
ttcctgaagtgtgctatcttgacaaaacctcagtcatatggtgtgttactgcagttacca
gctcctcaacttgagaatgccttgagtaagaatccgacactgaaggcacccttggctgag
catgccgagcagccgaatattcgatcaactcttccaaggtctaccttggtggttctgggt
ctcgctgaagatcaaccacagcaaccagcagcagcacaagcacagagcagccaaaaccag
gctgtggaaaccagtagctctgctgcggatacggctacagaagtaactcaggaatcttct
gctgctagctag

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