KEGG   Sorghum bicolor (sorghum): 8078098
Entry
8078098           CDS       T01086                                 
Name
(RefSeq) tRNase Z TRZ3, mitochondrial
  KO
K00784  ribonuclease Z [EC:3.1.26.11]
Organism
sbi  Sorghum bicolor (sorghum)
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sbi03016]
    8078098
Enzymes [BR:sbi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.11  tRNase Z
     8078098
Transfer RNA biogenesis [BR:sbi03016]
 Eukaryotic type
  3'processing and CCA adding factors
   3'processing factors
    8078098
 Prokaryotic type
    8078098
SSDB
Motif
Pfam: Lactamase_B_4 Lactamase_B_2 Lactamase_B
Other DBs
NCBI-GeneID: 8078098
NCBI-ProteinID: XP_002457067
Position
3:complement(546493..560874)
AA seq 1549 aa
MPQVAAPLRRLLPLSQTLASAPAPLLHLSRRLLSSCSPASFGRAASLRALAYRRRRHPEP
RRGSSTLGKAPAKEEMDREVAFNRKRAEGKDGGKRGTMELKARRLNPVNTTCYVQILGTG
MDTQDTSPSILLFFDKQRFIFNAGEGLQRFCTEHKIKLSKIDHIFLTRVCSETAGGLPGL
VLTLAGIGDEGMSVNIWGPSDLDFLAGAMRSFIPNRAMLHTHSFGTDRNASSPQSKESII
ILDDEVVRISAMFVKPRYHNGTGSSNDSDMKPGDTAIVYACELPEIKGKFDPSKAAALGL
RPGPKYRELQLGNSVQSDQFDEMVHPSDVLGPSIPGPTVLLVDCPTQYHMPELFSLQPLS
CFYEDSPEQSGKKVNCIIHLGPSSVTRSVDYQNWMKKFGATQHIMAGHEIKNMEIPILKG
SARISSRLNFVCPQLFPSSGFWSVQPPNDVMENDKNASLEACGSVSAQNLLKFHLRPYAQ
LGLDRASIPNLFTYKDIVQELVSEIPEVSEVPEQVCKFWQNNVNDKNTLPPTGNRMVEEP
WINQKSDKLDDGASFQEIVWGKYPRGNQETPCCVEDATREDMEITFLGTGSSQPSKYRNV
SSIYINLFARGGILLDCGEGTLGQLKRRFGVNGADEAVKGLRCIWISHIHADHHTGLARI
LALRSKLLRGMPHKPLLVIGPRPLERFLNAYSTLEDLDMQFLDCRHTLKSSVEAFLSEND
SEPAIPQLANTIFAPGSRMENYNRKPASPRDTTALANFKEVLQESGLEILYSVPVLHCPQ
AFGVVFRAMEKTNSTGKVIPGWKVVYSGDTRPCPALIDASRDATVLIHEATFEDSMKDEA
IARNHSTTKEAIEVGTSAGAYRIILTHFSQRYPKIPVIDEVDMEKTCIAFDLMSVNLADL
PVVPKVLPHLKVLFKDELVVDEADELQEAAALRLIKYAVGKSGTDFKREMQRHSVAMRQL
VHYKGHPDPLRGDALNKAVRETANEAIAAIFSTEDPKPAVATESLGKRIQGFGNTNYEPS
RDDKKSFLSELTEVVGIGSASIKQGLSNFAAAHAMMTNDNGSTYKSPNLRRSLTTESERY
GRYDPSEIQSESRASSGASKNAASGSWGPTSSSVPTDDTSSSQPGIKTREERLLETIVTA
SGVRLQPTRDALQIFLTEASKLDAVALSRALENKLNSPLWQVRMKAICVLEAIVRKQDSD
PYSIITSYFIENTASVIKCSELPQVSLREKASKVLNMLIGEQPTGTTTTKAAVSIPVQMP
DLIDTGDQDDLATSSGQESNEQNTGNSAYVSSVDDLLGGEPIADTSVAADSNGSDPFADV
SFHEAETKETNDLFSGLTVEEKSSATVHDSSSSNKNELPDIFGSAPDSFIHGSVTDQGTV
NDLMAGLNLNGTGQAQSAVKAEPSSNFSGSQFFDTNNETSHVASAAALNGILGQNSFYQQ
QQTPLQYNFPQHMMINQSFPGQQLNYGAMGILLAQQQQLLQNLGNFNAGLGNSSFNSMHS
GNASVLPDIFNSSNQPQNHVAVMSSSKKDDTKAFDFVSDHLAAARGSRK
NT seq 4650 nt   +upstreamnt  +downstreamnt
atgccgcaggtggccgcccctctccgccgcctcctccccctctcccaaaccctagcgtcg
gcccccgcgcctctcctccacctctcgcgccgccttctctcctcctgctcccccgcctcc
ttcggccgcgccgccagcctccgcgccctcgcctaccgccgccgccggcaccccgagcct
cgccgtgggagcagcactctcgggaaggcgcccgccaaggaggagatggacagggaggtg
gcgttcaataggaagcgggccgaggggaaggacggcgggaagcgcggcaccatggagctc
aaggcccgcaggctcaaccccgtcaacaccacatgctacgtgcagatacttggtacagga
atggacacacaggacacttcaccttctattttactcttctttgacaagcaaaggtttatt
tttaatgcgggcgagggtcttcaacgtttctgtactgaacacaagataaaactatcaaaa
attgaccatatctttttgactcgcgtgtgctcagaaactgcaggtggccttccaggcctg
gtgctaactctagcaggaattggagatgagggcatgtcggtgaacatatggggaccttct
gatcttgactttttagctggggcaatgagatcttttatcccaaatagagcaatgcttcac
acacacagctttggtactgaccgaaatgcatcttcaccacaatctaaagagtccattatt
attcttgatgatgaagtagttcggatatcggcaatgtttgtcaaaccaaggtatcataat
ggaactggtagttcaaatgatagtgacatgaagcctggtgatactgctatagtatatgcc
tgtgagttgccagaaattaagggaaagtttgacccatctaaggctgctgcccttggcctt
aggcctgggcccaagtaccgtgaacttcaacttgggaattctgtgcagtctgatcaattt
gatgaaatggttcatccaagtgatgttcttggtccgtcaattcctggaccaactgttctt
ctggtggattgccccacacagtatcatatgccagaacttttttcactgcaaccccttagc
tgcttttatgaagattctccagagcaaagtggcaagaaagtaaattgcataatccactta
ggtccatcatctgtgactagatctgttgactatcagaactggatgaaaaaatttggcgca
acacaacatatcatggcaggacatgaaattaaaaatatggaaattcctatcttgaaaggt
agtgcaaggatatcatcacgcctcaattttgtatgccctcagctcttcccatcctctgga
ttttggtctgtacaacctccaaatgatgtcatggagaatgataagaatgcttcattggaa
gcctgtggaagtgtgtctgcgcaaaacctactaaagtttcatctgcgtccatatgctcaa
ctgggtttggatagagcttctattccaaacttgttcacctacaaggatattgtacaagag
cttgtatctgagatcccagaggttagtgaagttcctgaacaggtttgcaaattctggcaa
aataatgtgaatgataaaaatacactaccaccaactggcaatcgtatggttgaagaacca
tggatcaatcaaaaatcagataagctagatgatggcgcttcttttcaagaaattgtctgg
ggaaagtatccaaggggcaatcaggagaccccttgttgtgtggaggatgcaacaagggaa
gatatggagatcacttttttgggtacaggttcatctcagccttcaaaataccggaacgta
agttccatatatattaacttatttgcacgaggaggtatacttctggactgcggtgaagga
actttaggacaactgaaaaggagatttggtgtaaatggtgctgatgaagctgtaaaaggt
ttgaggtgtatttggatctcccatattcatgctgatcaccacactggcttggctagaatt
cttgctctaaggtctaagttgttaagagggatgcctcataaacccttgcttgtgattgga
ccaaggccacttgagagattcttaaatgcatattcgacgcttgaagatcttgatatgcag
ttcctagactgcagacatactttgaagtctagtgttgaggcctttctcagtgaaaatgat
tctgaaccagccatacctcaactggcgaacacaatatttgcccctggaagtagaatggag
aactacaacaggaagcctgcaagtccaagggataccacagctcttgctaatttcaaagaa
gttctacaggaatcaggtttagagattttgtatagtgtccctgtactacactgtccacag
gcatttggagttgttttcagggccatggagaaaacaaacagcactggaaaggtaattcca
ggctggaaggttgtatattctggcgacacgcgaccctgcccagctcttatagatgcatcc
agagatgccacagtgctaatacatgaggcaacatttgaggacagtatgaaggatgaagcg
atcgcgaggaaccatagtacaaccaaggaggccatagaagtaggcacatcggctggagct
taccggataattctgacccacttcagccagcgataccccaaaatcccagttatcgacgag
gtcgatatggagaagacctgcattgcctttgacctgatgagtgtaaaccttgcggatctg
ccagttgtgcccaaggttctaccacacctgaaggtcctgttcaaggacgagctggtagtt
gacgaggccgatgagctccaagaggctgctgctttacggttgatcaaatacgcagttgga
aaatccggtactgatttcaagagggagatgcaaaggcactcagtggctatgcgccagcta
gttcattacaaaggccaccctgatcccttaagaggggatgcccttaacaaggctgttcgc
gaaactgcaaatgaggctatagctgcaattttctccacagaggaccctaaacctgctgtc
gcaaccgaaagtcttggcaagcgcatacagggctttggaaatactaattacgagccatct
agagatgacaagaagtctttccttagtgaactaaccgaggtagtgggtattggaagtgca
tccatcaagcagggtttgagcaactttgctgcagcgcatgcaatgatgacaaatgacaat
ggtagcacgtacaagagccctaatctccgtagatctttgaccacagaatctgaaagatat
ggtcggtatgatccaagtgaaattcaaagtgagagccgtgcctcatctggtgcttcaaag
aatgcagcctctggttcttggggtccaacttccagttctgtaccaactgatgatactagc
tcaagtcaaccagggattaaaactcgtgaagaaagacttctggagacaatagttactgca
agtggcgtgagactgcaaccaacgcgagatgctttgcaaatttttttaacagaagcttcc
aaattggatgcagttgccttgagccgtgcacttgagaacaagctgaattctccattatgg
caggttcgcatgaaggctatttgtgtgttggaagccattgtaaggaaacaggattctgat
ccttattctatcatcacttcatatttcattgagaacacagcttctgttattaaatgctcc
gagctgccacaggtttctctcagagagaaggcctcaaaggtcttgaatatgctgattggg
gaacagcctactggaaccacaacaacaaaagctgctgtgtccatacctgttcagatgcct
gatttgattgatacaggtgatcaagatgatctagcaacaagttccggacaggaaagcaat
gaacagaatactgggaacagtgcatatgtttcttcagttgatgatttgcttggtggtgaa
cctattgctgatacaagtgttgctgctgatagtaatggaagcgatccatttgcagatgta
tcattccatgaggcagagactaaggagactaatgatctgttctcagggttgacagtagaa
gagaaatcatcagctactgtgcatgatagttcttcatcaaacaaaaatgaattaccagac
atctttggcagcgcccctgattctttcatccatggtagtgttactgaccaaggaactgtc
aatgatttgatggctggtttgaaccttaatggaacaggccaggctcagtctgcagttaaa
gcagagcccagtagcaacttcagtggttcacagttctttgatacaaacaacgagaccagc
catgtggcaagtgctgcagcattgaatggcattcttggtcaaaattcattttaccaacag
cagcagactcccttgcagtacaacttccctcaacatatgatgatcaatcaatcatttcct
gggcaacaattaaactatggtgccatggggattcttcttgctcagcagcagcagttactg
caaaatcttggaaatttcaatgctggacttgggaattcttctttcaattcgatgcacagt
ggaaatgcatctgtgcttccagatattttcaattcaagtaatcaacctcaaaatcatgtt
gcagtgatgagcagttcgaagaaagatgacactaaagcttttgattttgtttcggatcac
cttgcagcagcacgtggttcaagaaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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