KEGG   Sorghum bicolor (sorghum): 8078394
Entry
8078394           CDS       T01086                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03030  DNA replication
sbi03410  Base excision repair
sbi03420  Nucleotide excision repair
sbi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    8078394
   03410 Base excision repair
    8078394
   03420 Nucleotide excision repair
    8078394
   03430 Mismatch repair
    8078394
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sbi03032]
    8078394
   03036 Chromosome and associated proteins [BR:sbi03036]
    8078394
   03400 DNA repair and recombination proteins [BR:sbi03400]
    8078394
DNA replication proteins [BR:sbi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    8078394
  DNA Replication Termination Factors
   ELG1-RFC complex
    8078394
Chromosome and associated proteins [BR:sbi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    8078394
DNA repair and recombination proteins [BR:sbi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     8078394
  Check point factors
   HRAD17(Rad24)-RFC complex
    8078394
SSDB
Motif
Pfam: Rep_fac_C AAA Rad17 DNA_pol3_delta2 AAA_22 AAA_assoc_2 AAA_16 AAA_11 ATPase_2 AAA_5 DUF815 AAA_7 RuvB_N AAA_14 bpMoxR DNA_pol3_delta AAA_30 ResIII AAA_19 AAA_24 nSTAND3 AAA_3 AAA_18 AAA_2 DUF3086 SLFN-g3_helicase TIP49 AAA_28 MCM TniB
Other DBs
NCBI-GeneID: 8078394
NCBI-ProteinID: XP_002454641
UniProt: C5XTJ5
Position
4:complement(65168404..65171950)
AA seq 362 aa
MAGTAAAAPMDIDAAAPPPPPPGAAAKGKAPLSAGGRAAPWVEKYRPQSLADVAAHRDIV
DTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKLYGSQYSNMILELNASDERGIDVVR
QQIQDFAGARSLSFGARPSVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVN
KIIPALQSRCTRFRFAPLDGSHVRERLQHIIKSEGLSVDEGGLTALVRLSNGDMRKALNI
LQSTHMASQQITEEAVYLCTGNPMPNDIERIAFWLLNEPFSTSFKHISDMKMRKGLALVD
IIREVTMFVFKIEMPSDVRVKLINNLADIEYRLSFACNDKLQLGALISAFTDTRTAMVAA
AS
NT seq 1089 nt   +upstreamnt  +downstreamnt
atggcgggaaccgccgccgccgctcccatggacatcgacgccgcggcgccgcctccgccg
ccgcccggggcggcggccaagggcaaggcgccgctctccgccggcgggagggcggcgccc
tgggtcgagaagtaccggccccagtccctagctgacgtcgccgcccaccgcgacatcgtt
gacaccattgacaggcttacaaatgagaatagacttccgcacttgttgctatatgggcca
cctggcactgggaaaacatctacgattctggctgttgcgaggaagctatatgggtctcag
tatagcaacatgatcctggagctcaatgcatcagatgaacgtggtattgatgttgtcagg
cagcagatccaggattttgctggcgcacgcagcctctcttttggagcgaggccttctgtt
aagttggtcctcttggatgaagcagatgcaatgacaaaggatgcacaatttgcattgcga
agagtcattgagaagtatacaaggagcacaaggtttgcactcatttgcaaccatgtcaac
aaaattatccctgcacttcaatcaaggtgcactaggtttagatttgctccactagacgga
agtcatgttagagagcgtcttcaacatataataaaatctgaggggctcagtgtagatgag
ggtggcttgacagccctagtgcggttaagcaatggtgatatgaggaaggctttgaacata
ttgcagtcaacacacatggcatcccaacaaatcacagaagaagctgtctatctttgcaca
ggaaaccccatgccaaatgatattgagcggatagcattttggctattaaatgaaccattt
tcaactagcttcaaacatatatctgacatgaagatgagaaaaggtctggccttggttgat
atcatacgggaggttactatgtttgtgttcaaaatagaaatgccatctgatgttcgtgta
aagctaatcaataacttggctgatatcgaatacaggctaagctttgcatgcaacgataaa
ctgcagctgggcgcactgatctcagctttcacagatactcgcacggctatggttgctgct
gccagctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (30)   
   Pfam (30)   
All databases (46)   

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