KEGG   Sorghum bicolor (sorghum): 8078950
Entry
8078950           CDS       T01086                                 
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
  KO
K15172  transcription elongation factor SPT5
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    8078950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sbi03021]
    8078950
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8078950
Transcription machinery [BR:sbi03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     8078950
  RNA polymerase I system
     8078950
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     8078950
SSDB
Motif
Pfam: Spt5-NGN KOW Spt5_N
Other DBs
NCBI-GeneID: 8078950
NCBI-ProteinID: XP_002452895
Position
4:65013457..65020769
AA seq 1027 aa
MPRRSREEEEEVDDMEEEEEEEEEERGGKRSRAGGRGKRSGGVESFIDDAASEDEDADEE
EEDDDDDDDYGGGGRGRASKRRRSSILIDDMAQVDDDDDIDDDSSDVEPGFIDDTDAGVE
IRHNDAARRSIPHSSSMLEDDEDMQEIVRRLQNRYKEASHFDYDEEVTEVEQQALLPSVK
DPKLWMVKCVIGHERETAVCLMQKFIDRSDLQIKSVVALEHLKNFIYIEAEKEAHVKEAC
KGLRNIIASTKPTLVPIREMADVLSIESKSVDLSRDSWVRMKLGMYKGDLAKVVDVDNVG
RKVTVKLVPRIDLQVLANKLDGQEVPKKSFIPPPRFFSVDEARELHIRVGRRRNRDSGEY
FDVVGGLLFKDGFLHKTFSIKSISTHDIKPSFDELEKFKKPGDDLNEDVASLSTLFTNRK
KGHFMKGDAVIVIKGDLKNLKGSVEKVEDSTVHIQPKLAGLPRTLAFSETDLCKYFNPGD
HVKVISGVQEGATGMVVKVEGHVLIILSDTTKEHIRVFADHVVESSEVTTGVTRLGDYEL
HDLVLLNNSSFGIIIRVESEAFQVLKGVPDKPELVLVKLREIKCKIDRRTSAKDRYNNIV
STKDVVRIAEGACKGKQGPVEHIHRGILFIYDRHYLEHSGFICAKAQSCFLVGGSTGSHC
GNSMDKADPQFRAFGSQARILQSPGRLPPKGPHMNSGGRFGGRGSGGRGHDTLVNRCIKI
RSGPYKGYRGRVKEVTGVLVRVELDSLMKIVTVKREDIGDTAAVATPFRETCYSRGVETP
VHPSRTPLHPIQTPMRDPGATPVRDVMRTPMPNRAWVPLSPHRDNREDGDSTWASSPAYQ
PGTPRPRPYEAPTPGSGWTSWGDASVNTPSTNVPSTPIGQPMTPDPASYLVGTPGGQPMT
PGYGGMELMSPVIGGEAAGSWLLPDVLVNVSRGGDEVSNAVVKEVLPDGSCRVSLGPLGE
GDELIVTANELEVVRPKKNEKLKIMNGPLRGATGKLIGLDGSDGIVKVEGSLDVKIVDMA
ILGKLAA
NT seq 3084 nt   +upstreamnt  +downstreamnt
atgcctcgccgcagccgcgaggaggaggaggaggtcgacgacatggaagaggaagaggag
gaggaggaggaagagaggggcgggaagagatcgcgagccgggggccgcgggaagcggtcg
ggcggagtagagagcttcatcgacgacgccgccagcgaggacgaggacgcggatgaggag
gaggaggacgacgacgacgatgatgattacgggggcggcggccgtgggcgtgcctctaag
aggaggcggtcgtcgatcctgatcgacgacatggcccaggtcgacgacgacgacgacatc
gacgacgatagttcggatgtcgagcccggctttatagacgatactgatgctggggttgaa
attcgtcacaatgatgcggcaagaaggtctattcctcattctagctctatgttggaagat
gatgaggatatgcaagagattgtgaggcgactacaaaatagatataaagaagcatcccat
tttgattatgacgaggaagttaccgaggttgaacagcaggctctcttaccatcagtgaag
gatccaaagctttggatggtgaaatgtgtgatcggacatgagcgggaaacagcagtttgt
ctaatgcaaaagttcattgataggtcagatctccagataaaatctgttgttgcactagaa
cacctaaagaatttcatttacattgaagcagagaaagaagcccatgtcaaagaggcttgc
aaaggcttgcggaacattattgcttcaacaaaaccaactttagttcctataagagaaatg
gctgatgtcctctctattgagagcaagtctgttgacctttcaagggactcgtgggttcgg
atgaagcttggtatgtataaaggtgatcttgctaaggttgttgatgttgacaatgtgggc
cgaaaggttactgttaagctcgttcctagaattgatttacaagtgctggcaaataaactg
gatgggcaagaggtcccgaagaagtcattcattccaccacctaggttctttagtgtcgat
gaggcgagggagttgcacatccgtgttggcagaaggaggaatagagattctggggaatac
tttgatgttgttggtggtttgctgttcaaagatggtttcttgcacaaaacattctctata
aaatcgatcagcacgcatgatattaagccatcatttgatgaattagagaaattcaaaaaa
cctggtgatgacctcaatgaggatgtggctagcttgtccactctgtttacaaacagaaaa
aagggccacttcatgaaaggtgatgctgtaattgttattaagggtgacctcaagaactta
aaaggctctgttgagaaggtggaggatagtaccgtgcacattcaaccaaaactagctggg
cttccgagaacacttgccttcagtgagacggatctctgtaaatatttcaatcctggagac
catgtaaaagtcatatctggagttcaagagggtgcgacaggcatggttgttaaagtggaa
ggtcatgttttgatcattttatcagacactaccaaagaacatatccgtgtgtttgcagac
catgttgtggagagttctgaggtcaccacaggggttaccaggcttggtgattatgaattg
catgaccttgttcttcttaacaattcatcttttgggattatcatacgggtggagagtgaa
gcatttcaggttctgaaaggtgtgcctgataaacctgaattggtccttgtaaaactgaga
gaaataaaatgtaagattgatcgacgcacatcggcaaaagatcggtacaataacattgtg
tcaactaaggatgttgtgaggattgctgaaggagcatgtaagggaaagcaaggtcctgtg
gaacatatacacagaggcatactttttatctatgatcgccactaccttgagcattcagga
tttatctgtgcaaaagcacaatcatgtttccttgttggggggtcaactggcagccactgt
gggaattccatggataaagcagatccacagtttcgcgcttttggctctcaagcaaggatt
ttgcagtctccagggaggctgcccccaaaaggacctcacatgaattctggtggaaggttt
ggaggtagaggcagtggtggtagagggcacgataccctggtgaacagatgtatcaaaatt
agatctgggccatataagggatatcgaggccgtgttaaagaagtaactggtgtgcttgtg
cgtgtagagcttgactcgctgatgaaaattgtcacagttaagagggaggatatcggcgac
acagctgctgttgcaacaccatttcgtgaaacttgttattcaaggggtgttgaaacacct
gtgcatccatctcgaacgccactacatcctattcagactccgatgcgggatcctggagcg
accccagttcgagatgtaatgagaactcctatgcctaatcgagcctgggtgccattgagt
cctcacagggacaaccgggaagatggagattccacttgggcaagcagtccagcctaccag
ccaggaactccacgacctcgaccatacgaagctcccactcctgggtcagggtggacaagt
tggggtgatgcgtcagtgaacaccccaagcacgaatgttccctcaacacctattggtcaa
ccaatgaccccggatcctgcctcctatttggttggtactcctggtggccagccgatgact
ccaggctatggtggaatggaactaatgtctcccgtaataggtggcgaggctgcgggaagc
tggctgctgccagatgttttggtgaacgtctccaggggaggtgatgaggtcagcaatgct
gtggtgaaggaagtgctcccggatggatcatgtcgtgtatcccttgggccattgggtgag
ggagatgaactgatcgtcactgcaaacgagctagaggtggtcaggccgaagaaaaacgag
aagctcaagataatgaatggccccttgcgcggagccacaggaaaactcattggacttgat
gggtctgatggcatcgtgaaggtggaaggtagcttagacgtgaaaatagtggacatggcg
attcttggcaaattggcagcttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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