KEGG   Shewanella baltica OS195: Sbal195_0737
Entry
Sbal195_0737      CDS       T00622                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
sbn  Shewanella baltica OS195
Pathway
sbn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sbal195_0737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbn03019]
    Sbal195_0737
   03016 Transfer RNA biogenesis [BR:sbn03016]
    Sbal195_0737
Enzymes [BR:sbn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     Sbal195_0737
Messenger RNA biogenesis [BR:sbn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Sbal195_0737
Transfer RNA biogenesis [BR:sbn03016]
 Prokaryotic type
  tRNA degradation factors
   Sbal195_0737
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 TFIIE_beta
Other DBs
NCBI-ProteinID: ABX47915
UniProt: A9L116
Position
885416..887839
AA seq 807 aa
MIKDPHFEREQDKYENPIPSREYIIDYLRSQKSPITRDSIAAALNIQEEEQLEALRRRLR
AMERDGELVFTRGQSYGLPEKMDLIPGTVLGHREGFGFFKPDEGGDDLFISNRDMLMYFH
GDKVLAQKAGTDRRGRREARLVRLIQPRSAAIVGRYHVDSGMAFVIADDKRITQEILVAN
EDRNGARQGDVVVVELTRRPGRFVKAAGKVTEVLGKQMAPGMEIEIALRNYDLPHTWSPV
IEKKLRRIPDEVTDADKVGRVDLRHLPLVTIDGEDARDFDDAVYAEKKAGGGWRLWVAIA
DVSYYVRTDSALDTEARARGNSVYFPSQVIPMLPEKISNGLCSLNPHVDRLCMVAEMTVS
AKGKLSGYKFYPAVMYSHARFTYTQVAEMLEGGPIAPEHEALFPHLQCLQSLYLALDEQR
AERGAIAFETMETQFIFNEQRKIDKIVPRGRNQAHKIIEECMILANVSAAKFVKKHKGDV
LYRVHEAPSEQKLANFKEFLAERGLTMPGGLEPTPSDYQNVMLQIADRPDAELIQVMLLR
SMRQAIYTPDNEGHFGLALEEYAHFTSPIRRYPDLVLHRVIRYLLAKERGEATEKWTQDG
GYHYQLDELDQLGEECSTTERRADEATRDVSDWLKCEFMQDHVGDTFEAVIASVTSFGLF
VRLNELFIDGLVHISSLGSDYYQFDPMRQRLIGEHTGQVYQVGDPVTVKVAAVNLDDRQI
DLVMLGDDGKGGKRKASASRDKPMTARERVNREGAKQGKAGKTTTPSTKAEAGKAKPKAK
AGTKAKKTAVKDPAKKPKAAKRSTRKK
NT seq 2424 nt   +upstreamnt  +downstreamnt
atgatcaaagaccctcattttgagcgtgaacaggataagtacgaaaaccctatcccaagc
cgtgagtatattatcgattacttacgttctcagaaatcacctatcactcgtgacagtatt
gccgcggcgttaaacatccaagaggaagaacagcttgaggccctgcgccgtcgcctacgt
gcgatggaacgcgatggcgaactcgtgttcacccgtgggcagagctatggcttgcccgag
aaaatggatcttatccccggcactgtactcggacacagagaaggcttcggctttttcaaa
cccgatgaaggcggtgatgacttatttatttcgaaccgcgatatgctgatgtatttccat
ggtgataaagtgctcgcgcaaaaagcgggcacagatcgtcgtggtcgccgcgaagcgcgt
ttggtgcgtttgatccagccgcgcagtgccgcgattgttggccgttatcatgttgatagc
ggtatggcatttgtcattgccgatgataagcgtataacccaagaaatcttagtcgcgaat
gaagatcgcaacggcgcccgtcaaggcgatgtggttgtggttgaattaacgcgtcgcccg
ggtcgttttgttaaggctgcgggtaaagtgactgaagtgcttggtaagcaaatggcgccg
gggatggaaatcgaaatcgccttgcgtaactacgacttaccccatacttggtcacctgtg
atcgagaagaaactgcgccgaattcccgatgaagtgaccgacgccgataaagtcggccgt
gtagatttacgtcatctgccattagtgactatcgacggcgaagacgcccgcgattttgac
gatgccgtgtatgcggagaaaaaagccggtggcggctggcgtttatgggttgcgattgct
gacgttagttattatgttcgcaccgattcggctttagataccgaagcgcgtgcccgtggt
aactcagtgtatttcccatcgcaagtgatccctatgctgccggagaaaatctccaatggc
ctatgttcacttaatcctcacgtcgaccgtttatgtatggtcgccgagatgacagtgtct
gccaaaggcaagttgtcgggttataagttttatccggctgtgatgtattcccatgcccgt
ttcacttatacccaagtggcggagatgttagaaggcggtccaattgcgcctgagcatgaa
gccttgttcccgcatcttcagtgtttacagtcattgtatttagcgctggatgagcaaaga
gctgagcgtggggcgattgcgtttgaaaccatggaaacacagttcattttcaatgagcag
cgcaagattgataaaatcgtgccgcgtggccgtaatcaagcccataaaatcattgaagaa
tgcatgattttagccaacgtttctgcagctaaatttgtgaagaaacacaaaggcgacgtg
ctgtaccgagtgcatgaagcgccatctgagcaaaagttggcgaactttaaagagttcctt
gctgagcgtggtttgactatgcctggcggacttgagccaacgccgtcagattaccagaac
gtgatgctgcaaattgccgaccgtcccgatgctgaactgatccaagtgatgttgctgcgc
tctatgcgtcaggcaatttacaccccagataatgaaggtcacttcggtctagccttagaa
gaatatgcgcattttacctcgcccattcgccgttatccggatttagtcttacatagagtt
atccgttatttactggcgaaggaaagaggcgaagccacagaaaagtggacgcaggatggt
ggctaccactatcaactcgatgaactcgaccaattgggcgaagagtgttcgactacagag
cgtcgtgccgatgaagcgactcgtgatgttagcgattggctcaagtgcgagtttatgcaa
gatcacgtcggcgataccttcgaagctgtgattgcctcagtgacgagctttggtttgttc
gtgcgcttaaatgagctgtttatcgatggcttagtgcatatatcaagcctaggtagcgat
tactaccaattcgatcctatgcgtcaacgtcttatcggtgagcacactggccaagtctat
caagttggcgatcctgtgacggttaaggtcgctgctgttaacttagatgacagacagatt
gatttagtcatgctgggcgatgacggcaaaggtggcaagcgtaaagcctctgccagtcgt
gataagccgatgactgcccgtgagcgtgttaatcgcgaaggtgctaagcaaggcaaagcg
ggtaaaaccacaactcctagcactaaggctgaagctggcaaagccaaacctaaggctaaa
gcgggcactaaagcgaaaaagacagcagtaaaagatccggctaaaaagccaaaagccgct
aagcggagcacgagaaagaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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