KEGG   Shigella boydii Sb227 (serotype 4): SBO_0405
Entry
SBO_0405          CDS       T00301                                 
Symbol
ybbB
Name
(GenBank) putative capsule anchoring protein
  KO
K06917  tRNA 2-selenouridine synthase [EC:2.9.1.3]
Organism
sbo  Shigella boydii Sb227 (serotype 4)
Brite
KEGG Orthology (KO) [BR:sbo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sbo03016]
    SBO_0405 (ybbB)
Enzymes [BR:sbo01000]
 2. Transferases
  2.9  Transferring selenium-containing groups
   2.9.1  Selenotransferases
    2.9.1.3  tRNA 2-selenouridine synthase
     SBO_0405 (ybbB)
Transfer RNA biogenesis [BR:sbo03016]
 Prokaryotic type
  tRNA modification factors
   Other tRNA modification factors
    SBO_0405 (ybbB)
SSDB
Motif
Pfam: Rhodanese T2SSE AAA_16 AAA_18 AAA_23 DUF3333 AAA_22
Other DBs
NCBI-ProteinID: ABB65114
ShiBASE_China: SBO0405
UniProt: Q324Z4
Position
complement(423422..424516)
AA seq 364 aa
MQERHTEQDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMNNDERAAVGTCYKQQGS
DAALALGHKLVAGEIRQQRIDAWRAACLQNPQGILCCARGGQRSHIVQSWLHAAGIDYPL
VEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQQQPNGVDLEGLARHRGSAFG
RTLQPQLSQASFENLLAAEMLKTDARQDLRLWVLEDESRMIGSNHLPECLRERMTQAAIA
VVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQEYCEYLHHGLSAIKRRLGLQRYNE
LAAQLDTALTTQLTTGSTDGHLAWLVPLLKEYYDPMYRYQLEKKAEKVVFRGEWAEVAEW
VKAR
NT seq 1095 nt   +upstreamnt  +downstreamnt
atgcaagagagacacacggaacaggactatcgtgccctgctgattgctgatacgcccatt
attgatgttcgcgcccctatcgagtttgagcaaggcgcaatgcccgccgctatcaatctg
ccgttaatgaataacgatgaacgcgccgccgttggcacctgctataaacagcaagggtca
gacgcggcgctggcgctggggcataaactggtggcgggtgaaattcgtcagcagcgcata
gacgcctggcgggcagcgtgcctgcaaaatccgcaaggtattctctgctgtgcccgtggc
ggtcaacgctcacatattgtgcaaagctggttgcatgcagcggggattgattatccgctg
gtggaaggcggttataaggcactgcgccagaccgcgattcaggcgactattgaactggca
caaaaaccgatagtgctgattggcggttgtaccggcagcggtaaaacgctgttagtgcag
caacagccgaacggtgtcgatctggaagggctggcgcgtcatcgcggttcggcgtttggt
cgcacgttacaaccacaacttagccaggcgagttttgaaaatctgctggctgccgaaatg
ctaaaaaccgacgcccgtcaggatttgcgcctgtgggtgctggaagatgaaagccggatg
atcggttcgaatcacctgccggaatgtctgcgcgagcgaatgactcaggcggcgattgcg
gtggtagaagatccgtttgagatccgtcttgaacgcctgaacgaagagtatttcttgcgt
atgcatcatgattttacccacgcgtacggcgacgaacagggctggcaggaatattgcgaa
tacctgcatcacggactttcggctattaagcgtcggctggggttacagcgctataacgaa
ctcgctgcccagctggatacggcgctgacaacgcaactcaccaccggcagcaccgacggt
catctggcctggctggtgccgttacttaaagaatattacgacccaatgtatcgctatcag
cttgagaaaaaagcggaaaaagttgtctttcgcggtgagtgggcggaagtggcggaatgg
gttaaggcgcggtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   SHIBASE_CHINA (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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