KEGG   Shigella boydii Sb227 (serotype 4): SBO_0573
Entry
SBO_0573          CDS       T00301                                 
Symbol
nei
Name
(GenBank) endonuclease VIII and DNA N-glycosylase with an AP lyase activity
  KO
K05522  endonuclease VIII [EC:3.2.2.- 4.2.99.18]
Organism
sbo  Shigella boydii Sb227 (serotype 4)
Pathway
sbo03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sbo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    SBO_0573 (nei)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sbo03400]
    SBO_0573 (nei)
Enzymes [BR:sbo01000]
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     SBO_0573 (nei)
DNA repair and recombination proteins [BR:sbo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     SBO_0573 (nei)
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS
Other DBs
NCBI-ProteinID: ABB65262
ShiBASE_China: SBO0573
UniProt: Q324J6
Position
593880..594671
AA seq 263 aa
MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVGTRGKALLTHFS
NDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTH
PFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVG
LTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGELCER
CGGIIEKTTLSSRPFYWCPGCQH
NT seq 792 nt   +upstreamnt  +downstreamnt
atgcctgaaggcccggagatccgccgtgcagcggataacctggaggcggcgatcaaaggc
aaaccactaactgatgtctggtttgccttcccgcagttaaaaacttatcaatcacaactt
atcggtcaacacgttacccatgtgggaacgcgtggtaaggcgttgttaactcatttttcc
aacgacttaacgctctacagccataatcagctttacggcgtctggcgcgtggttgatacc
ggcgaagagccgcagaccacgcgagtattgcgggtaaaactgcaaacggctgacaaaacc
attctgctttatagcgcctcggatattgagatgttgaggccggaacaactgaccacgcat
ccgtttttacaacgcgttggtcccgatgtgctggatccgaatctgacgccggaggtggta
aaggaacggttattgtcaccgcgctttcgtaaccgtcagtttgcaggattactgctcgat
caggcgtttctggctgggcttggcaattatttgcgggtggagatcctctggcaggttggg
ttgactggaaatcataaagcgaaagatctcaatgcggcgcaactggatgcactcgcacac
gcgttactggagattcctcggttttcttacgctacgcgggggcaggtggatgagaataag
catcatggggcgctgtttcgctttaaggtttttcatcgtgatggcgaactgtgcgaacgc
tgtggcggcatcattgagaaaaccacgttgtcctcgcgcccgttttactggtgtccaggc
tgccagcactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
   SHIBASE_CHINA (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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