KEGG   Saimiri boliviensis boliviensis (Bolivian squirrel monkey): 101042827
Entry
101042827         CDS       T04350                                 
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
  KO
K13126  polyadenylate-binding protein
Organism
sbq  Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Pathway
sbq03015  mRNA surveillance pathway
sbq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbq00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    101042827 (PABPC4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101042827 (PABPC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbq03019]
    101042827 (PABPC4)
   03041 Spliceosome [BR:sbq03041]
    101042827 (PABPC4)
Messenger RNA biogenesis [BR:sbq03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     101042827 (PABPC4)
   mRNA cycle factors
    Stress granule specific factors
     101042827 (PABPC4)
Spliceosome [BR:sbq03041]
 Complex C
  Other components
   Complex C specific factors
    101042827 (PABPC4)
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded RRM_7 RRM_3 ApbA_C
Other DBs
NCBI-GeneID: 101042827
NCBI-ProteinID: XP_003937074
UniProt: A0A2K6TK25
Position
Unknown
AA seq 659 aa
MNAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEK
HEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPAAGGYFVPAVPQAQGRP
PYYTPNQLAQMRPNPRWQQGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTT
TQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYK
YASSVRSPHPAIQPLQAQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSN
LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKVGAVAAATS
NT seq 1980 nt   +upstreamnt  +downstreamnt
atgaacgctgcggccagcagctaccccatggcctccctgtacgtgggcgacctacactcg
gacgtcaccgaggccatgctgtacgaaaagttcagccccgcggggcctgtgctgtccatc
cgggtctgccgcgatatgatcacccgccgctccctgggctatgcctacgtcaacttccag
cagccggctgatgctgagcgggctttggacaccatgaactttgatgtgattaagggaaag
ccaatccgcatcatgtggtctcagagggatccctctttgagaaaatctggtgtgggaaac
gtcttcatcaagaacctggacaaatctatagataacaaggcactttatgatactttttct
gcttttggaaacattctatcctgcaaggtggtgtgtgatgagaacggctcgaagggttat
gcctttgtccacttcgagacccaagaggctgctgacaaggccatcgagaagatgaatggc
atgctcctcaatgaccgcaaagtatttgtgggcagattcaaatctcgcaaagagcgggaa
gccgagcttggagccaaagccaaggaattcaccaatgtttatatcaaaaacttcggggaa
gaggtggatgatgagagtctgaaagagctattcagtcagtttggtaagaccctgagtgtc
aaggtgatgagagatcccaacgggaaatccaaaggctttggctttgtgagttacgaaaaa
catgaggatgctaataaggctgtggaagagatgaatggaaaagaaataagtgggaaaatc
atatttgtaggccgtgcacaaaagaaagtagaacggcaggcagagttaaaacggaaattt
gagcagttgaaacaggagagaattagtcggtatcagggggtgaatctctacattaagaac
ttggatgatactattgatgatgagaaattaaggaaagagttttctccttttggatcaatc
accagtgctaaggtaatgttggaagatggaagaagcaaagggtttggcttcgtctgcttc
tcatctcctgaagaggcaaccaaagcagtcactgagatgaatggacgcattgtgggttcg
aaaccactgtatgttgccctggcccagaggaaggaagagagaaaggctcacctgaccaac
cagtatatgcaacgtgtggctggaatgagagcacttcctgccaatgccatcttaaatcag
ttccagcctgcagcgggtggttacttcgtgccagcagtcccacaggctcagggaaggcct
ccctattatacacctaaccagttagcgcagatgaggcctaatccacgctggcagcaaggt
gggagacctcaaggcttccaaggaatgccaagtgctatacgccagtctgggcctcgtcca
gctcttcgccatctggctccaactggtaatgctccggcctctcgtggcctccctactacc
actcagagagtcgggtctgagtgcccggaccgcttggctatggactttggtggggctggt
gccgcccagcaagggctgactgacagctgccagtctggaggcgttcccacagctgtgcag
aacttagcgccacgcgctgctgttgctgctgctgctccccgggctgttgccccctacaaa
tacgcctccagtgtccgcagccctcatcctgccatacagcctctgcaggcacagcctgcg
gtccatgtgcaggggcaggagccactgactgcctccatgctggctgcagcacccccccag
gaacagaagcagatgctgggagaacgcttattcccactcatccaaacaatgcattcaaac
ctggctggaaaaatcacgggaatgctgctggaaatcgacaactctgagctgctgcacatg
ttagaatcccctgagtctctccgctccaaggtagatgaagctgtagcagttctacaggct
catcatgccaagaaagaagctgcccagaaggtgggcgctgttgctgctgctacctcttag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (4)   
   RefSeq(nuc) (4)   
Protein domain (7)   
   Pfam (7)   
All databases (26)   

Download RDF
DBGET integrated database retrieval system