KEGG   Serinus canaria (common canary): 103813373
Entry
103813373         CDS       T05755                                 
Symbol
CNOT4
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X2
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
scan  Serinus canaria (common canary)
Pathway
scan03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scan00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103813373 (CNOT4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:scan03000]
    103813373 (CNOT4)
   03019 Messenger RNA biogenesis [BR:scan03019]
    103813373 (CNOT4)
   04121 Ubiquitin system [BR:scan04121]
    103813373 (CNOT4)
Enzymes [BR:scan01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     103813373 (CNOT4)
Transcription factors [BR:scan03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    103813373 (CNOT4)
Messenger RNA biogenesis [BR:scan03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103813373 (CNOT4)
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103813373 (CNOT4)
Ubiquitin system [BR:scan04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    103813373 (CNOT4)
SSDB
Motif
Pfam: zf-RING_4 RRM_1 zf-C3HC4_3 zf-UDP zf-C3HC4_2 zf-RING_2 Torus Rtf2 Nup35_RRM_2 DZR_2 zf-CCCH_2 zf-C3HC4
Other DBs
NCBI-GeneID: 103813373
NCBI-ProteinID: XP_009084874
UniProt: A0A8C9MV38
Position
Unknown
AA seq 762 aa
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGTVDKNKNKVTALQRPNSNNKDAWPSLQSSSKSANGLTMEHRKT
PPILENGTDPEHITPDGADSDFGPIDKPSDSLSIGNGDSSQQITNSDTPSPPPGLTKPNP
VIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQTSSDWPTAPEPQ
SLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKELSVQDQPSL
SPTSLQNPAPHTTTAKGPGSGFLHPAAPTNANSLSSTFPVMPQRFPQFQQHRAVYNSFSF
PGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHSTGLGGIPISDNSSSVESL
NMKEWQDGLRALLPNININFGGLPNASSPSNANHSVPTSNTATTDSLNWDSPGSWMDPAI
ITGIPASTGNSLDTLQDDNPPHWLKSLQALTEVDGPSAAPSQTHHSNPFGTQIPLHRASW
NPYSPPSNPTSFHSPPPGFQTAFRPPSKTPTDLLQSSALDRH
NT seq 2289 nt   +upstreamnt  +downstreamnt
atgtctcgcagccctgacgctaaggaagaccctgtggaatgccctctttgcatggagcct
ctggaaattgatgacatcaatttcttcccttgcacctgtgggtaccaaatctgtcgtttc
tgttggcatcgtattcgcactgatgagaatggactttgtcctgcttgcagaaagccatat
ccagaagatccagcagtgtacaaaccactctcccaggaagagctgcagaggataaaaaac
gaaaagaaacagaaacaaaatgagaggaaacagaagatatcagagaatcgcaaacatttg
gccagtgtacgggttgtacagaagaaccttgtcttcgtggtagggctatctcagcgccta
gcagatccagaggttttgaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcattaataacagcacatcatatgcaggctcacagggtccaagtgccagtgcatat
gtaacctacatccggtcagaagatgccctcagagccatacagtgcgtcaataatgtggtg
gtagacggcagaacacttaaggcatcattaggtacaacaaaatattgcagttattttcta
aaaaatatgcagtgtccaaaaccagactgcatgtatctacatgagctaggggatgaagca
gccagtttcacaaaagaagaaatgcaggcgggtaagcaccaggaatatgaacagaaacta
ctgcaagaattatacaaactaaaccccaactttctccagttatctacgggtacagttgac
aagaacaagaacaaagtgacagcactgcagagacccaacagtaataacaaagatgcctgg
ccatcattacagagttcaagtaaatcggccaacggtttaacaatggaacacaggaaaacg
cctcctatattagaaaatggcacagacccagaacacatcactccagatggtgcagactca
gatttcggccctatcgataaaccttcagattccctcagtataggaaatggtgacagctct
cagcagataacaaacagtgacacaccttcaccaccacctggtttaacaaaacccaatcca
gttatacccatcagttcatcgaatcacagtgcacggtctccttttgaaggggctgtaaca
gaatcacagtcactcttctctgacaacttccggcaccctaaccccatccctagtgggctt
cctcctttccccagctctccacagacttcgagtgactggcccacagcaccagaaccacag
agcctcttcacatcagaaactataccagtatcctcctccacagactggcaagcagctttt
gggtttggttcctccaaacagcaagaggacgacttagggtttgatccctttgacatcacc
cgcaaagccttagcagacctgattgagaaggaactgtcagtccaagaccaaccttccctt
tcgcccacatctcttcagaaccctgccccacacactacaactgccaaagggccaggttct
ggattcctgcatcctgctgcacccacaaatgccaactctctcagtagcacctttccagtc
atgccacagaggtttccacagtttcaacagcatcgagcagtttacaactccttcagtttt
ccaggccaagcagctcgctatccttggatggccttcccacgcaatagcatcatgcacttg
aaccacacagcaaatcccacctcaaatagtaatttcttggacttgaatctcccaccacaa
cacagcacaggtctgggagggatccctatatcagacaacagcagttctgtagagagttta
aatatgaaggaatggcaggacgggctaagggcacttctaccgaacattaacatcaacttt
ggtggactgcccaatgcttcttccccctccaacgccaaccacagtgtaccaacgtccaac
actgccaccaccgacagcctgaattgggacagccctggcagctggatggaccccgcaatc
atcacaggtatcccagcctccacaggaaacagtttagacactcttcaagatgacaatcct
ccacattggctaaaatctcttcaggccctcacagaggtggacggccccagtgcagcgcca
tcacagacgcatcacagtaaccccttcggcacacagatccctctgcacagagccagttgg
aatccctactctcctccttcaaaccccaccagcttccattccccacctccaggcttccag
acagccttcagaccccccagtaaaacccccacagacctactacagagctcagcgctggat
cgtcattag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (8)   
   UniProt (1)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (12)   
   Pfam (12)   
All databases (38)   

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