KEGG   Serinus canaria (common canary): 103821258
Entry
103821258         CDS       T05755                                 
Symbol
DDX58
Name
(RefSeq) probable ATP-dependent RNA helicase DDX58 isoform X1
  KO
K12646  ATP-dependent RNA helicase DDX58 [EC:5.6.2.6]
Organism
scan  Serinus canaria (common canary)
Pathway
scan04622  RIG-I-like receptor signaling pathway
scan04623  Cytosolic DNA-sensing pathway
scan05164  Influenza A
scan05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:scan00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    103821258 (DDX58)
   04623 Cytosolic DNA-sensing pathway
    103821258 (DDX58)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    103821258 (DDX58)
   05168 Herpes simplex virus 1 infection
    103821258 (DDX58)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:scan04054]
    103821258 (DDX58)
Enzymes [BR:scan01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103821258 (DDX58)
Pattern recognition receptors [BR:scan04054]
 Cytoplasmic pattern recognition receptors
  RIG-I-like receptors
   103821258 (DDX58)
SSDB
Motif
Pfam: RIG-I_C RIG-I_C-RD DEAD ResIII CARD_2 Helicase_C AAA_22 AAA_19 AAA_25
Other DBs
NCBI-GeneID: 103821258
NCBI-ProteinID: XP_018776388
Position
Unknown
AA seq 816 aa
MLEIDPVAIMPYINTCLIERECDEILQISEYRSKAAGITKLIECLCRSDKENWPKSLQLA
LDNAGYYNASELWNIREDNGKDIDGEMTDASENYFETMMTFSEEAECDNLSKNLSSASES
IYEFSSVYEPKKPRSYQIELAQPAIGGKNTLICAPTGSGKTFVALMICEHHLQNVPSGRK
AKIVFLATKVPVYEQQKNVFRQHFERSGYSVQGICGETVANISVENVIQDSDIIVLTPQI
LVNSMEKGILSSLSIFTLMIFDECHNTTGNHPYNVLMTRYLDQKFDSSANQLPQIVGLTA
SVGVGNAKSTNETVEHICTLCSYLDIQAISTVRENKEDLQRFGNKPETHIRWVKMRAQNH
FADIISGLMSETEVLMKKIYSVVDTISQINKNYFGTQRYEQWIVSTQKKCRLLQLEDKEK
ESSICRDLFICTEHLRKFNDALIISEDARIEDALAYLNEFFINVKNGPFTELEKQLTEKF
QEKELELTALSKDESNENPKLEELACILDEAYHYNPQTRTILFAKTRALVAALKKWIEGN
PLLSHIKLDVLMGKGRRDQKTGMTLPMQKGVLDAFRNDKDIRLLIATSVADEGIDITECN
FVVLYEYFGNVTKMIQVRGRGRARDSKCILVTSKTEVVENEKLNSYKEEMMNAAIEKLQN
WDETTFARKIRGLQMKEKMLRDSRKNKTKPEIVEGKKNLLCGKCKAYVCSTDDIRIIKDS
HHTVLGDAFKERYTTKPHRKPFQFDGFEKKSKMHCRNTECQHDWGIIVKYKIFDNLPVIK
IRSFVLEDVETGTQMDFQKWKSINLSLKKFDEETSS
NT seq 2451 nt   +upstreamnt  +downstreamnt
atgttagaaatcgatcctgtagcaatcatgccatacataaacacatgcctgatagagagg
gagtgtgatgagatcctgcagatcagtgaatacagaagcaaggcagccgggataactaaa
ctcattgagtgcctctgtcgctcggataaggaaaactggcccaaaagtcttcagctggca
ttggataatgcaggatattacaatgcaagtgaactgtggaatataagagaagataatggc
aaagacattgatggtgaaatgacagatgcctctgagaattactttgaaaccatgatgaca
ttttctgaagaagcagaatgtgataatttgagcaaaaatctctcttcagcttcagaaagc
atctatgagttttcatctgtttatgaaccaaagaagcctcggagctatcagattgagctt
gcacagcctgctattggtgggaaaaacacattgatttgtgcccccactggatctggaaaa
acttttgtggcacttatgatttgtgaacatcatttgcaaaacgttccctcaggacgaaag
gcaaaaattgtcttccttgcaaccaaagtgccagtgtatgagcaacagaaaaatgtattc
aggcagcattttgaaagaagtggatactctgttcaaggaatttgtggtgaaacagttgca
aatatctctgtagaaaatgttatacaggacagtgacatcattgtgctaacgccccagatt
cttgtgaatagcatggagaaagggatccttagctccctctccatcttcacgctgatgata
tttgatgagtgccacaacacgacaggcaaccacccttacaacgtgttgatgaccagatac
ctggatcagaaatttgactcctctgcaaaccagctgcctcagattgtaggtttaactgct
tctgttggagttggtaatgccaaaagcactaatgaaactgtagagcacatctgtaccctc
tgctcctaccttgacatacaggccatttccactgtcagagagaacaaagaagatctgcag
aggtttggaaacaagccagaaacacatatcagatgggttaaaatgcgagctcagaatcac
tttgcagacattatctcaggtctgatgtctgagacagaggtgttgatgaagaagatttac
tcagtggtagataccatctcccaaatcaacaagaattactttggaacacagagatatgaa
cagtggatagtttctactcagaagaaatgcagactattgcaactggaagataaggagaag
gagagcagtatttgtagagaccttttcatttgtactgaacacttgcggaaattcaatgat
gctctcattatcagtgaagatgcccgcattgaagatgctttagcctacctaaatgaattt
ttcataaatgtaaaaaatggaccatttacagagttagagaagcagctgacggagaaattc
caagaaaaagaactagagctgactgccctttcaaaagatgaatcaaatgagaatccaaag
ttggaagagcttgcttgcatcctggatgaagcataccactataacccacagactcgtact
attctctttgccaagacaagagccttagtagcagctttgaagaagtggatagaaggaaac
cctcttcttagccacataaagctggatgtgttgatgggtaagggaagaagagatcagaaa
acaggtatgaccctgccaatgcagaagggtgtactggatgcattcagaaatgacaaagac
atcagactgctaattgctacatctgttgctgatgaaggcattgatattactgagtgcaac
tttgtggtgctctatgaatactttggtaatgtcaccaaaatgatccaagtcagaggtcgt
ggaagggcaagagacagcaagtgcatccttgtgacaagtaaaacagaagtggttgagaat
gaaaaactaaacagttacaaggaagaaatgatgaatgcagctattgaaaagctacagaac
tgggatgaaacaacatttgcaagaaagatacgtggcctgcaaatgaaggaaaagatgcta
cgagattccaggaagaacaaaacaaaacctgaaatagtggaagggaaaaaaaatcttttg
tgtggaaaatgcaaagcatatgtctgcagtacagatgacatcagaattataaaggattct
catcacactgtcttaggtgacgcgttcaaggagcgttatacaacaaagccccacaggaaa
ccttttcagtttgatggttttgagaaaaaaagcaagatgcattgccgaaatactgagtgc
cagcatgactgggggatcatagtgaagtacaagatatttgacaatctaccagtgatcaaa
atcagaagctttgtactagaggatgttgaaactgggacacaaatggattttcagaaatgg
aaaagtattaatttgtctttgaagaagtttgatgaagaaacatccagctga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (4)   
   RefSeq(pep) (4)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (9)   
   Pfam (9)   
All databases (29)   

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