KEGG   Staphylococcus capitis subsp. capitis: AYP1020_1182
Entry
AYP1020_1182      CDS       T03970                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
scap  Staphylococcus capitis subsp. capitis
Pathway
scap03030  DNA replication
scap03410  Base excision repair
scap03420  Nucleotide excision repair
scap03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:scap00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AYP1020_1182 (ligA)
   03410 Base excision repair
    AYP1020_1182 (ligA)
   03420 Nucleotide excision repair
    AYP1020_1182 (ligA)
   03430 Mismatch repair
    AYP1020_1182 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scap03032]
    AYP1020_1182 (ligA)
   03400 DNA repair and recombination proteins [BR:scap03400]
    AYP1020_1182 (ligA)
Enzymes [BR:scap01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AYP1020_1182 (ligA)
DNA replication proteins [BR:scap03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AYP1020_1182 (ligA)
DNA repair and recombination proteins [BR:scap03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AYP1020_1182 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AYP1020_1182 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     AYP1020_1182 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AYP1020_1182 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HHH
Other DBs
NCBI-ProteinID: AKL92287
Position
complement(1211403..1213406)
AA seq 667 aa
MKDLQSRVNELHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIDIEEKHPEYKTADSPTV
RVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRENIGNVEYMCELKIDGLAVSL
KYQNGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLNFEVRGEAYMPRQSFMNLNA
EKEENGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFDATTQSGALQELD
DLGFKTNQERERVADIDGVLDYIEKWTEKRESLSYDIDGIVIKVNDLDQQEEMGYTQKSP
RWAIAYKFPAEEVVSKLLDIELSIGRTGVVTPTAILEPVRVAGTTVSRASLHNEDLIHER
DIRIGDSVVVKKAGDIIPEVVKSILDRRPKDAKTYHMPTHCPSCDHELVRIEGEVALRCI
NPKCQAQLIEGLIHFVSRQAMNIDGLGTKIIQQLYENELIKDVADIFYLKEEDLLPLERM
GNKKVENLLAAIEKAKDNSLEHLLFGLGIRHLGVKASQVLAEKYETMDRLLNVTEEELVA
IHDIGDKLAQSVVTYLENLDIRALIQKLKDKNVNMNYKGIKTTEIEGHPEFNGKTIVLTG
KLEQMTRSEATQWLEMQGAKVTSSVTKSTDIVIAGADAGSKLAKAEKFGTEIWTEDEFAK
KQKELNN
NT seq 2004 nt   +upstreamnt  +downstreamnt
atgaaagatttacaatctcgtgtaaatgaactacatgatttattaaaccaatatagctat
gaatattatgtacaggataatccatctgtaccagatagtgaatatgataaattattacat
gaacttatagatattgaagagaagcatcccgaatataagactgctgattcacctactgta
cgtgtaggtggagaggcgcagtcctcatttgaaaaggtaaatcatgatacaccaatgtta
agtttagggaatgcatttaatgaagaagatttaagaaagttcgaccaacgtattagagaa
aatatcggaaacgtcgagtatatgtgcgaactaaaaatcgatggattagctgtttctctc
aagtatcaaaatggtagattcgttcaaggattgacacgaggtgatggcactactggagag
gatattactgagaatttaagaactatccacgctataccattaaaaattaaggaaccactt
aattttgaggtgcgtggagaagcctatatgcctagacaatcatttatgaatctaaatgcg
gaaaaggaagagaatggtgaacaaccttttgcgaatccaagaaatgcagcagcaggatct
ttaagacaacttgattctaaacttgcagccaaaagaaagttaagtgtcttcttgtatagc
gtaaatgatttaactgagtttgatgcaacaactcaaagtggggctttacaagaacttgat
gacttaggttttaaaacaaaccaagaaagagaacgagtagctgatattgatggtgttctc
gactatatagagaaatggactgagaaaagagagtctttatcatatgatattgacggtatt
gttattaaagtaaatgatttagatcaacaagaggaaatggggtacacacagaaatctcca
agatgggcaattgcctacaaatttcctgctgaagaagtcgtttcaaaactattagatatc
gagttaagcatagggagaactggtgtagtaactccaacagctattcttgaacccgttaga
gtagcaggtacaactgtttctagagcgtctttacataatgaggacctcatacatgaaaga
gatattcgaattggtgacagtgtagtagttaagaaggctggtgacatcattcctgaagta
gtcaagagcatattagatagacgaccaaaggatgccaagacatatcatatgccaacacat
tgcccaagttgcgatcatgagttggttagaatagagggtgaagttgcacttcgttgcatc
aatcctaaatgtcaagcacaacttatagaaggactaatacatttcgtctctagacaagca
atgaacattgatggacttggaacaaaaattattcaacaattatatgaaaatgagttaatc
aaagatgttgcagatatcttttatcttaaagaagaagacttacttcctttagaacgtatg
ggtaataaaaaagttgagaatctattagctgctatagagaaagctaaagataactcactt
gaacatttattatttggtctaggtatcagacatttaggtgttaaagcaagccaagttcta
gcagagaaatatgaaacgatggatcgtttattaaatgtgactgaggaagaacttgtagcg
atacatgatataggtgataaactagctcaatctgttgtcacttatttagaaaatctagat
attcgtgctttaattcaaaaattaaaagacaaaaatgttaatatgaattataaaggaatt
aaaactacagaaattgagggccatcctgaatttaatggtaaaactattgtattaactggt
aaactagaacaaatgacaagaagtgaagctacacaatggttagaaatgcaaggggctaaa
gtaacaagtagtgttactaaaagtacagatattgttatagccggtgctgatgcaggttct
aaacttgctaaagctgaaaagtttggtacagaaatttggactgaagatgaatttgctaaa
aaacaaaaagaattaaataattag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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