KEGG   Staphylococcus capitis subsp. capitis: AYP1020_1268
Entry
AYP1020_1268      CDS       T03970                                 
Name
(GenBank) putative DEAD-box ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
scap  Staphylococcus capitis subsp. capitis
Pathway
scap03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scap00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AYP1020_1268
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scap03019]
    AYP1020_1268
   03009 Ribosome biogenesis [BR:scap03009]
    AYP1020_1268
Enzymes [BR:scap01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     AYP1020_1268
Messenger RNA biogenesis [BR:scap03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     AYP1020_1268
Ribosome biogenesis [BR:scap03009]
 Prokaryotic type
  rRNA helicases
   AYP1020_1268
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 AAA_30 Flavi_DEAD
Other DBs
NCBI-ProteinID: AKL92368
Position
complement(1302016..1303551)
AA seq 511 aa
MQNFKELGISDRTVQTLESMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL
IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQNVQVVTVFGGMPIERQIKALKRGP
QIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPSDQRQTML
FSATMPKAIQDLVQQFMKTPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP
DLAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNG
RRMNALRPPHRKEVLKAREDDIKEKVQNWMSKDSEPRLQRISSELLEEYDSTELVASLLQ
ELVEANDEVEVQLTFEKPLARKNRNSRGGGSRRGNNNKRGNGKFDNKNRRSKGSKGHSNK
KKNNKKFERRDKQNKGSNQSMRGRTFADHQK
NT seq 1536 nt   +upstreamnt  +downstreamnt
ttgcaaaactttaaagaattagggatctcggatagaacggttcaaacactggaatctatg
ggatttaaagaacctacacctatccaaaaagacagtatcccttatgcgttagaaggagac
gacatccttggtcaagcccaaacaggtacggggaaaacaggggcttttggtattccttta
attgaaaaagttgtaggccaacaaggcgtacaatcactcattttagcgccaacaagagaa
cttgctatgcaagttgcggaacaattaagagagtttagtaaaggccaaaatgttcaagtc
gttacggtcttcggtggaatgccgattgaacgacaaataaaagcacttaaaagaggacca
caaatcgtagtaggaactccaggacgtgtaattgatcacctaaatcgtcgtactttaaaa
actaatggtattcatacattaattttagatgaagctgacgaaatgatgaatatgggattc
atcgacgatatgagatttattatggacaaaattccatctgaccagcgtcaaacaatgtta
ttctcagcgactatgcctaaagcaattcaagacttagttcaacaatttatgaagacgcct
aaaatcattaaaacaatgaataatgaaatgtcagatccacaaatagatgaatactatact
attgttaaagaattagagaaatttgatacatttacaaatttccttgatgttcatcaacca
gatttagcgattgtatttggacgtacgaaacgtcgtgttgatgaattaactagtgcgtta
ttatctaaaggctataaagcagaaggcttgcatggtgatattactcaagctaaacgttta
gaagtcttgaagaaattcaaaaatgaccaaattgacattttagttgccactgacgtagca
gctagaggtttggatatttcaggtgtaagtcacgtttataactttgatattcctcaagat
acagaaagctatactcatcgtataggtcgaacaggacgtgcaggtaaagaaggtatcgct
gtaacatttgtaaatccaattgaaatggattatatacgtcaaattgaagatgtcaatgga
cgtcgaatgaacgctttaagaccaccacatcgtaaagaagtacttaaagctcgtgaagac
gatattaaagaaaaagttcaaaactggatgtctaaagacagtgaacctcgtttacaacgc
atttcaagtgaattacttgaagaatatgacagcactgagttagttgcatcattgctacaa
gaattagtagaagcaaacgatgaagttgaagtacagttaacgttcgagaaaccattagca
cgtaagaatcgcaatagtagaggtggcggttcaagaagaggtaacaataacaaacgtggc
aatggaaaatttgataataaaaatagacgttcaaaagggtctaaaggtcattcaaataaa
aagaaaaataataaaaaattcgaacgtcgtgataaacaaaataaaggttcaaaccaatca
atgagaggtcgtacatttgccgatcatcaaaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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