KEGG   Streptomyces scabiei: SCAB_83621
Entry
SCAB_83621        CDS       T01187                                 
Name
(GenBank) putative transcription terminator factor (fragment)
  KO
K03628  transcription termination factor Rho
Organism
scb  Streptomyces scabiei
Pathway
scb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SCAB_83621
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:scb03021]
    SCAB_83621
   03019 Messenger RNA biogenesis [BR:scb03019]
    SCAB_83621
Transcription machinery [BR:scb03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SCAB_83621
Messenger RNA biogenesis [BR:scb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SCAB_83621
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind AAA_25 DUF3086 Spore_III_AA NACHT AAA AAA_22 ATPase_2 MazE_antitoxin
Other DBs
NCBI-ProteinID: CBG75314
UniProt: C9YYF6
Position
complement(9282234..9283376)
AA seq 380 aa
MTTTTLERTSTDRQPPARVTGVLEIAQGGQGHLRVDGCLPDPADPQVPAALIRRYGLRKG
DTVEGVRDGGRALTGVERINGRTPQELGRRPHFHDLTPLHPRERLRLEHPASGLTGRLVD
LVAPVGKGQRGLIVAPPKTGKTVLLQQVAAAIAANHPEARLMVVLLDERPEEVTDMRRSV
RGEVYASTFDRSPRQHIALAELVVERAKRLVEQGEDVVILLDSLTRLCRAHNNAAAAGGR
TLSGGVDAAALHGPKRLFGAARLTEEAGSLTVIATALVETGSRADDFFFEELKSTGNMEL
RLDRALADRRVFPAVDITPSGTRREELLLTPAELTAVRGLRRALRSREGQANLETLLERL
RATPDNAAFLRQVQPTLPAA
NT seq 1143 nt   +upstreamnt  +downstreamnt
atgaccaccaccacactcgaacgcacgtccaccgatcggcagcctcccgcccgggtcacc
ggtgtcctggagatcgcgcagggcgggcagggacacctgcgcgtcgacggctgcctgccc
gaccccgccgacccgcaggtccccgccgcactgatccgccggtacgggctgcgcaagggc
gacaccgtcgagggcgtacgcgacggcggacgcgccctcaccggcgtcgaacggatcaac
ggccgtacgccccaggaactgggccgccgcccgcacttccacgacctcaccccgctgcac
ccgcgcgagcggctgcggctcgaacacccggcgagcggcctgacgggccgtctggtcgac
ctcgtggcacccgtcggcaagggtcagcggggactgatcgtcgccccgccgaagaccggc
aagacggtgctgctccagcaggtggccgccgcgatcgccgccaaccacccggaggcccgc
ctcatggtggtgctcctcgacgaacggcccgaggaggtgaccgacatgcggcgctccgta
cggggcgaggtgtacgcgtcgacgttcgaccggtcccccaggcagcacatcgcgctcgcc
gaactcgtcgtggagcgcgccaagcggctcgtcgaacagggcgaggacgtcgtgatcctg
ctggactccctgacgaggctgtgccgggcccacaacaacgcggccgccgccggtggccgc
acgctcagcggcggcgtcgacgccgccgccctgcacggacccaaacggctgttcggcgcc
gcccggctgaccgaggaggccggatccctcaccgtcatcgccaccgccctggtggagacc
gggtcccgcgcggacgacttcttcttcgaggagctcaagagcaccggcaacatggagctc
cgcctcgaccgcgcgctggccgaccgccgtgtgttccccgccgtcgacatcaccccctcc
ggcacccgccgggaggaactcctgctgacaccggccgagttgacggccgtacgcggactg
cggcgggccctgcggtcacgcgagggacaggcgaacctcgaaaccctgctggagcggctg
cgggccaccccggacaacgcggccttcctgcggcaggtgcagcccacgctgccggcggcc
tga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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