KEGG T01573: Spica

Gracilinema caldarium: Spica_2869

Entry

Spica_2869        CDS       T01573

Name

(GenBank) DNA gyrase, B subunit

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

scd Gracilinema caldarium

Brite

KEGG Orthology (KO) [BR:scd00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scd03032]
    Spica_2869
   03400 DNA repair and recombination proteins [BR:scd03400]
    Spica_2869
Enzymes [BR:scd01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     Spica_2869
DNA replication proteins [BR:scd03032]
Prokaryotic type
  DNA Topoisomerases
   Spica_2869
DNA repair and recombination proteins [BR:scd03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      Spica_2869

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3 Rad1 UFD1

Other DBs

NCBI-ProteinID:

AEJ20961

UniProt:

F8F3C4

Position

complement(3237121..3239028)

AA seq 635 aa
MDSSYSAQSIQVLKGLEAVRKRPGMYIGSTGIDGLHHLVYEVVDNSVDEAMQGHCTDILV
VLEKNDIVRVEDNGRGIPVDIHPSEKVSALELVMTKLHAGGKFDKNSYKVSGGLHGVGVS
VVNALSTWCEVFVHRDGKIHYQKYHIGVPEESVKVIGTTNKRGTIVRFLADATIFETTTY
NFDVLSNRLRELAFLNKGIRISIRDERLTTPKSHEFIFEGGVVSFVEYLNQNKTVLHKEC
IYIAGTRDDIEVECAIQYNDGFNEIMFSFVNDINTREGGTHLVGFKSALTRTLNEYLKKS
KLAKKMEESLSGDDVREGLTAVLSVKVPNPQFEGQTKGKLGNSEVKGIVESLVNEQLELF
LDQHPDIVNAILEKSVLAAKARIAARQARDATRRKNLMESAGLPGKLADCSEKDPTKCEL
FIVEGDSAGGSAKMGRNRAFQAILSLWGKMLNVEKTHIEKVITNDKLQPIIASIGAGIGD
SFDISKLRYHKIIIMADADVDGSHIRTLLLTFFYRYMTELIERGHVYLAMPPLYKITYEK
KVFYAYDDAEKDRILAESGKDPEKVAIQRYKGLGEMNPDQLWETTMDPERRNIVQVHMDD
AVEAERIFSTLMGEQVEPRRIFIEENALAVSYLDV

NT seq 1908 nt +upstreamnt +downstreamnt
atggattcaagctattcagcgcaaagtattcaggtgttaaaaggcctggaggcagtacga
aaacgccctggtatgtacatcggttcgacgggcatcgatgggttacaccatcttgtttat
gaagtggttgataactctgtcgatgaggccatgcagggccattgtacagatattctcgtt
gtattggaaaaaaatgatatcgttcgggtagaagataatggtcgaggtatccccgttgat
attcatccctctgaaaaggtgagtgccctggagcttgttatgaccaagcttcatgcgggt
ggtaagttcgataaaaactcttataaggtgtcgggcggtctgcatggtgtcggtgtttct
gttgtaaatgctctttctacttggtgtgaagtatttgtccatagggatggaaagatacat
tatcaaaaatatcatattggggttccggaagaatcggtaaaagtcataggaaccactaat
aaacggggtaccatagtccgattccttgcagatgcaacgatattcgaaacaacgacttat
aattttgatgttctctcgaaccggctgagggaactcgcctttttaaataaaggcattagg
atctccattcgagatgaacgactaactacgccgaagagccatgagtttatcttcgaagga
ggggtggttagctttgtcgaatatctgaatcaaaataaaacggtcctccataaagaatgt
atttatattgctggtacgagggatgacatagaagtcgagtgtgccatccaatataacgat
ggttttaacgaaataatgttttcctttgttaatgacatcaatacccgagaaggtggtacc
catctggtaggctttaagtctgcccttacaagaactttgaacgagtatttaaaaaagtca
aagcttgcaaaaaaaatggaagaaagtctttccggcgatgatgtgcgggaagggcttact
gcggtcctttctgttaaggtaccaaatccacagttcgaaggtcagactaagggaaagctg
ggtaactcggaagtgaagggtattgtcgagtccctggttaatgaacagctggaattattt
cttgaccaacatccggatattgttaatgccattctggaaaaaagcgttcttgcagcaaag
gcccgaatcgctgcccggcaggcaagggatgcaacccgccgcaaaaacctcatggaaagt
gcgggtcttccgggaaaacttgcggactgttcggaaaaggacccgacaaaatgcgaactc
tttattgtcgagggtgattcagccggggggtctgccaaaatgggccggaaccgggcgttt
caggcaattttgtccctctggggtaagatgcttaacgtagaaaagacccatatcgaaaaa
gtaattaccaatgataaacttcagccgattatagccagtattggtgcagggataggtgat
agttttgatatatcaaaactgcggtaccataaaattatcattatggccgatgcagacgtg
gacggttctcacatcagaacccttttgctgacctttttttatcgttatatgaccgaattg
atcgagcggggccatgtctatctggccatgcctcctctgtacaagattacctacgaaaag
aaggtcttctacgcctacgatgatgcagaaaaagaccggattcttgcagagtctggaaag
gacccggaaaaggttgctatccaacgctacaaaggtttgggtgaaatgaatccggaccag
ctgtgggaaacgacgatggatccggaacggcggaacattgtccaggttcatatggatgat
gcggtagaggcagagcggattttctcgacccttatgggtgaacaggtggaaccgcggcgg
atatttattgaagaaaacgctcttgctgtttcctatcttgatgtataa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

Download RDF

DBGET integrated database retrieval system