KEGG   Saccharomyces cerevisiae (budding yeast): YAL043C
Entry
YAL043C           CDS       T00005                                 
Symbol
PTA1, FUN39
Name
(RefSeq) RNA-processing protein PTA1
  KO
K06100  symplekin
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    YAL043C (PTA1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sce03021]
    YAL043C (PTA1)
   03019 Messenger RNA biogenesis [BR:sce03019]
    YAL043C (PTA1)
Transcription machinery [BR:sce03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     YAL043C (PTA1)
Messenger RNA biogenesis [BR:sce03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     YAL043C (PTA1)
    U7-dependent histone pre-mRNA processing factors
     YAL043C (PTA1)
SSDB
Motif
Pfam: SYMPK_PTA1_N TetR_HI_0893_C Spore_coat_CotO
Other DBs
NCBI-GeneID: 851255
NCBI-ProteinID: NP_009356
SGD: S000000041
UniProt: Q01329
Position
I:complement(58695..61052)
AA seq 785 aa
MSSAEMEQLLQAKTLAMHNNPTEMLPKVLETTASMYHNGNLSKLKLPLAKFFTQLVLDVV
SMDSPIANTERPFIAAQYLPLLLAMAQSTADVLVYKNIVLIMCASYPLVLDLVAKTSNQE
MFDQLCMLKKFVLSHWRTAYPLRATVDDETDVEQWLAQIDQNIGVKLATIKFISEVVLSQ
TKSPSGNEINSSTIPDNHPVLNKPALESEAKRLLDMLLNYLIEEQYMVSSVFIGIINSLS
FVIKRRPQTTIRILSGLLRFNVDAKFPLEGKSDLNYKLSKRFVERAYKNFVQFGLKNQII
TKSLSSGSGSSIYSKLTKISQTLHVIGEETKSKGILNFDPSKGNSKKTLSRQDKLKYISL
WKRQLSALLSTLGVSTKTPTPVSAPATGSSTENMLDQLKILQKYTLNKASHQGNTFFNNS
PKPISNTYSSVYSLMNSSNSNQDVTQLPNDILIKLSTEAILQMDSTKLITGLSIVASRYT
DLMNTYINSVPSSSSSKRKSDDDDDGNDNEEVGNDGPTANSKKIKMETEPLAEEPEEPED
DDRMQKMLQEEESAQEISGDANKSTSAIKEIAPPFEPDSLTQDEKLKYLSKLTKKLFELS
GRQDTTRAKSSSSSSILLDDDDSSSWLHVLIRLVTRGIEAQEASDLIREELLGFFIQDFE
QRVSLIIEWLNEEWFFQTSLHQDPSNYKKWSLRVLESLGPFLENKHRRFFIRLMSELPSL
QSDHLEALKPICLDPARSSLGFQTLKFLIMFRPPVQDTVRDLLHQLKQEDEGLHKQCDSL
LDRLK
NT seq 2358 nt   +upstreamnt  +downstreamnt
atgtcatctgcagagatggaacaattgttacaggccaagacactggccatgcacaacaat
ccaacggagatgctgcccaaggtgctcgaaactacggcatccatgtaccacaacggtaat
ctcagcaagctgaagttgcctttggccaagttttttacacagttagttctagacgtggtg
tcgatggactctccaattgcgaatactgagagaccgtttattgctgctcaatatctgcca
ctacttcttgctatggcgcaatccaccgcggacgtactagtgtacaagaatatcgtgctt
attatgtgcgcttcatacccgctggtgttggatctggttgctaagacatcaaaccaggaa
atgtttgatcagttgtgtatgctgaagaagttcgtgctctcgcactggagaactgcatat
cctttgcgtgccaccgttgacgatgaaacggatgtcgaacaatggctggcgcagattgac
caaaatatcggcgtgaaattagcgaccatcaagttcatatctgaggtcgtgctgtcgcaa
actaaatcacccagcggcaacgagattaattcatctaccatcccggataaccaccctgtg
ttgaacaaaccggctttggagagcgaggctaagaggcttcttgatatgttgctaaactac
ctaattgaggaacagtacatggtctcgtccgttttcattggtatcatcaattctttatcc
ttcgtcatcaaaagaaggccgcagacaacaataagaattctttccgggctgttgcgtttc
aacgtcgacgccaagtttcccctagagggcaagtctgacttgaactacaaactatccaag
agatttgttgaaagggcgtacaagaactttgtgcaatttgggctaaaaaatcaaatcatt
acaaaatccctctcatccggatcagggtcatcgatctactccaagctgaccaagatttct
caaactttacacgttattggcgaagagaccaagagcaagggaattttgaacttcgaccct
tccaagggcaatagcaagaaaacgttgtccaggcaggacaaactaaaatacatctcacta
tggaaaaggcaattatccgcgttattgtctactctaggggtgtccacaaagacccccacg
cctgtgtccgcacctgcaacgggctcttcaaccgaaaacatgcttgatcaactgaagata
ttgcaaaaatacaccctcaacaaggcttcacaccagggcaatacttttttcaacaactca
cccaaaccaatcagcaacacctactcatctgtgtactcattgatgaacagttcgaactcc
aaccaggatgtgacccagctacccaatgacatacttatcaagctgtccacagaggccatc
ttgcaaatggacagcacgaaactgatcaccggattgtctatcgttgcttcgaggtacacg
gatttaatgaatacgtacatcaattctgtaccgtcctcgtcatcatcaaagaggaaatcc
gacgatgatgacgacggcaacgacaatgaagaagttggaaacgatggcccaacggctaat
agcaagaaaatcaaaatggaaacagaaccactagcggaggaaccagaggagcccgaagac
gatgaccgaatgcagaagatgcttcaagaagaggaaagcgcccaagaaatctcaggagat
gccaacaaatcaacttctgccattaaggagatcgcacccccctttgaacctgactcattg
acgcaggatgaaaaactaaagtacctctcaaagctgaccaagaaactgtttgaattatcc
ggtcgccaggatactacccgggccaaatcttcgtcttcctcctccatattactggacgat
gacgactcctcgtcatggttacacgtcttaatcagattggttacgagaggaatcgaagca
caagaggccagtgacctgattcgtgaagaactgcttggcttcttcatccaggatttcgag
caacgtgtcagtctgatcattgaatggctcaatgaagaatggttcttccaaacctcgctg
catcaagatccctctaactacaaaaaatggtccttaagagttctcgagtctctgggtcca
ttccttgaaaacaaacacagacgattcttcatcagacttatgagcgaactgcccagtctt
caaagcgatcatcttgaggcactgaagcctatctgcctggatccggcaagaagttccctt
ggtttccaaacgctaaagtttctcattatgtttagacccccagtgcaggacactgttcgc
gacctgctgcatcagctaaagcaagaagatgaaggcttacacaagcagtgcgattcactg
cttgacaggctaaaatga

  All links  
Gene (22)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (29)   

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