KEGG   Saccharomyces cerevisiae (budding yeast): YBL026W
Entry
YBL026W           CDS       T00005                                 
Symbol
LSM2, SMX5, SNP3
Name
(RefSeq) Sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03018  RNA degradation
sce03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    YBL026W (LSM2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YBL026W (LSM2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sce03019]
    YBL026W (LSM2)
   03041 Spliceosome [BR:sce03041]
    YBL026W (LSM2)
Messenger RNA biogenesis [BR:sce03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     YBL026W (LSM2)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     YBL026W (LSM2)
Spliceosome [BR:sce03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    YBL026W (LSM2)
 Complex C
  U2 snRNP components
    YBL026W (LSM2)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 852255
NCBI-ProteinID: NP_009527
SGD: S000000122
UniProt: P38203
Structure
Position
II:join(170623..170676,170805..171038)
AA seq 95 aa
MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNI
FIRGSTVRYVYLNKNMVDTNLLQDATRREVMTERK
NT seq 288 nt   +upstreamnt  +downstreamnt
atgcttttcttctcctttttcaagactttagttgaccaagaagtggtcgtagagttaaaa
aacgacattgaaataaaaggtacactacaatcagttgaccaatttttgaatctgaaacta
gacaacatatcatgcacagatgaaaaaaaatatccacacttgggttccgtaaggaatatt
tttataagaggttcaacagtcaggtacgtttacttgaataagaacatggtagatacgaat
ttgctacaagacgctaccagaagggaggtaatgactgaaagaaaataa

  All links  
Gene (8)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (15)   
   PDB (15)   
Protein domain (1)   
   Pfam (1)   
All databases (28)   

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