KEGG   Saccharomyces cerevisiae (budding yeast): YBR087W
Entry
YBR087W           CDS       T00005                                 
Symbol
RFC5
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03030  DNA replication
sce03410  Base excision repair
sce03420  Nucleotide excision repair
sce03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    YBR087W (RFC5)
   03410 Base excision repair
    YBR087W (RFC5)
   03420 Nucleotide excision repair
    YBR087W (RFC5)
   03430 Mismatch repair
    YBR087W (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sce03032]
    YBR087W (RFC5)
   03036 Chromosome and associated proteins [BR:sce03036]
    YBR087W (RFC5)
   03400 DNA repair and recombination proteins [BR:sce03400]
    YBR087W (RFC5)
DNA replication proteins [BR:sce03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    YBR087W (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    YBR087W (RFC5)
Chromosome and associated proteins [BR:sce03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    YBR087W (RFC5)
DNA repair and recombination proteins [BR:sce03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     YBR087W (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    YBR087W (RFC5)
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA AAA_22 AAA_assoc_2 Rad17 AAA_16 DNAX_ATPase_lid NYD-SP12_N Rep_fac_C RuvB_N
Other DBs
NCBI-GeneID: 852383
NCBI-ProteinID: NP_009644
SGD: S000000291
UniProt: P38251
Structure
Position
II:423765..424829
AA seq 354 aa
MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI
FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQME
QVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAP
IKSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM
ALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIIL
KELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCLD
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgtcattgtgggtagataaatacagacctaagtccttgaatgctctttcacataatgaa
gagttgacaaattttctaaaatcgttatctgatcagcctcgtgatttacctcatctttta
ctgtatggaccaaatggtacaggtaagaaaacgcgttgtatggcattattggagtccata
tttggacctggagtctatagattgaaaattgatgtcagacaatttgtcactgcttcgaac
agaaaactagaactgaatgtggtcagctcgccataccatttagagatcacgccaagtgat
atgggtaacaatgatagaattgtcatccaagaactattgaaagaagtggctcaaatggaa
caagtggactttcaagattctaaggatggacttgcccatagatataagtgtgttattatc
aacgaggcgaactcgttaacaaaagatgctcaagctgctttaagacgtaccatggaaaaa
tactccaaaaacattaggttgataatggtctgcgattcgatgtcgcctataattgctcct
atcaaatcccgttgtctgttgattcgttgtcctgcaccaagcgatagcgaaatttcaact
atcttgtctgatgtggtgacaaatgaaagaatacaactagaaacaaaggatattttaaaa
agaattgctcaggcatcgaatggaaacttgcgagtctccctattaatgcttgaatctatg
gcactgaacaacgaattagcattgaaaagcagtagccctataataaaaccagattggatt
atagtgatccataaattaacgaggaaaatcgttaaagagagatctgtcaattctttaatc
gaatgcagagctgtcctatacgatttactagctcattgtatacctgccaatatcatctta
aaggaactaacgttttctttgttggatgtggaaaccctgaataccacgaataaatcgtcc
ataattgaatactcaagtgtttttgacgaaagattatcacttggaaacaaagcaatattc
catttggaagggttcatagcaaaagttatgtgctgtctagattaa

  All links  
Gene (17)   
   RefGene (14)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (41)   
   PDB (41)   
Protein domain (12)   
   Pfam (12)   
All databases (74)   

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