KEGG   Saccharomyces cerevisiae (budding yeast): YBR198C
Entry
YBR198C           CDS       T00005                                 

Gene name
TAF5, TAF90
Definition
(RefSeq) chromatin modification protein
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    YBR198C (TAF5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sce03021]
    YBR198C (TAF5)
   03036 Chromosome and associated proteins [BR:sce03036]
    YBR198C (TAF5)
Transcription machinery [BR:sce03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     YBR198C (TAF5)
   Coactivators
    SAGA/TFTC/STAGA complex
     YBR198C (TAF5)
Chromosome and associated proteins [BR:sce03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     YBR198C (TAF5)
    STAGA complex
     YBR198C (TAF5)
    TFTC complex
     YBR198C (TAF5)
    SAGA complex
     YBR198C (TAF5)
    SLIK complex
     YBR198C (TAF5)
SSDB
Motif
Pfam: WD40 TFIID_NTD2 ANAPC4_WD40 WD40_like LisH Nucleoporin_N Cytochrom_D1
Other DBs
NCBI-GeneID: 852497
NCBI-ProteinID: NP_009757
SGD: S000000402
UniProt: P38129
Structure
PDB: 
2J49

Position
II:complement(616127..618523)
AA seq 798 aa
MSQKQSTNQNQNGTHQPQPVKNQRTNNAAGANSGQQPQQQSQGQSQQQGRSNGPFSASDL
NRIVLEYLNKKGYHRTEAMLRAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKP
ISNPTNLSSKRDAEGGIVSSGRLEGLNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYP
IFIYLFLNLVAKNPVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSH
KYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIVESVTAREKLADGIKVLSD
SENGNGKQNLEMNSVPVKLGPFPKDEEFVKEIETELKIKDDQEKQLNQQTAGDNYSGANN
RTLLQEYKAMNNEKFKDNTGDDDKDKIKDKIAKDEEKKESELKVDGEKKDSNLSSPARDI
LPLPPKTALDLKLEIQKVKESRDAIKLDNLQLALPSVCMYTFQNTNKDMSCLDFSDDCRI
AAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKDEDPTCKTLVGHSGTVYSTSFSPDNKYL
LSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIY
PLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVC
PDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADHTVRV
WDLKKATTEPSAEPDEPFIGYLGDVTASINQDIKEYGRRRTVIPTSDLVASFYTKKTPVF
KVKFSRSNLALAGGAFRP
NT seq 2397 nt   +upstreamnt  +downstreamnt
atgtcacagaagcaaagtacgaatcagaatcaaaatggcacgcatcagccacaaccagta
aagaatcaacgaactaataatgctgctggcgccaattccggccagcagccacagcaacag
agtcaaggccagtctcaacagcaggggaggtccaatggtccgttttcggcgtcagacttg
aatagaattgtcctagagtacctgaataaaaagggataccaccgtacagaggccatgctg
agagccgagagtggacgtacactaacacctcaaaacaaacaatcaccagcaaatactaaa
acaggtaaatttcctgaacaatcatcaattcctccgaaccccgggaagacagctaaaccc
ataagcaatccaactaatttgtcatccaagagagatgcagaaggtggtatagtatctagc
gggcgactagaagggctcaacgcacctgaaaattatatacgtgcatattcaatgttgaaa
aactgggtagattcgtcgctggaaatttacaagccggaactaagctacatcatgtaccca
atattcatttatttatttttaaatttggtggccaaaaatcctgtttacgcccgtcgtttc
tttgatagattttctcccgattttaaggacttccatggctcagaaattaatagacttttc
agtgtcaattctatagatcacatcaaggaaaatgaggtcgcaagtgctttccaatctcac
aagtacagaattactatgtctaaaaccactttaaatcttctcttatattttttgaatgaa
aatgagagtattggaggttcattaataattagtgtaataaatcagcacctagatccaaat
attgtagaatcagtaaccgcaagggaaaaattggctgatggaataaaagttctcagtgat
agtgaaaacggaaatggtaaacaaaatttagaaatgaattctgttcctgtcaagctggga
cctttcccaaaagacgaggagtttgttaaggagattgaaactgaattgaaaattaaggat
gatcaagagaaacaactaaatcaacaaactgcaggtgacaattacagtggagccaacaat
agaaccttattgcaagaatataaagctatgaataacgaaaaatttaaggataatactggc
gacgatgataaagacaaaattaaagataaaatcgccaaagatgaggaaaaaaaagagagc
gaattgaaggtggatggtgaaaaaaaagacagcaatttatcttcgccagcacgtgatatt
ttacctttaccaccaaagacggcactagatttgaagttggagattcagaaggtcaaggaa
tctcgtgatgccatcaaactagataatttacagttggccttaccaagcgtgtgcatgtat
acattccaaaacacaaataaagacatgtcatgtttagatttcagtgatgattgtaggata
gcggctgctggctttcaagacagttatatcaagatctggtcactcgacggctcatcactt
aataatcctaacatcgcgttaaataacaacgacaaggatgaagacccaacgtgtaaaact
ttggtggggcacagtggtacagtatattcaacaagtttcagtccggataataagtattta
ctttctggttctgaagataaaaccgtcaggctatggtccatggatactcacaccgcgcta
gtaagctataagggccataatcaccctgtgtgggatgttagtttctccccgctaggccat
tatttcgccactgcatcgcacgaccaaaccgcaaggttatggtcatgcgatcacatatat
ccattaagaatatttgcaggacatttaaatgatgttgattgtgtgtcatttcatccgaac
ggttgctatgtgtttacgggatccagcgataagacgtgtcgaatgtgggacgtttctaca
ggcgactcggttaggttatttcttggacatactgcgcccgtcatttctattgctgtttgt
ccagatggtaggtggttgtccactggtagcgaagatggtattattaatgtatgggatatt
ggtaccggcaaaaggttgaaacaaatgcgtggccatggtaagaatgccatttattcctta
tcatatagcaaagagggaaacgtacttattagtggaggtgccgatcatacagtccgtgta
tgggatttgaaaaaggccactactgagccaagcgcagaaccagatgagccattcattgga
tacttgggtgacgttactgcatctataaaccaagatataaaagaatatggtcgcagaaga
acagtaatacctacaagcgatttagtagcgtcgttctacaccaaaaagacgcctgttttt
aaggtcaagttcagcagaagcaatttagcccttgcaggaggtgctttcaggccataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (36)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (52)   

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