KEGG   Saccharomyces cerevisiae (budding yeast): YBR198C
Entry
YBR198C           CDS       T00005                                 
Symbol
TAF5, TAF90
Name
(RefSeq) chromatin modification protein
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    YBR198C (TAF5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sce03021]
    YBR198C (TAF5)
   03036 Chromosome and associated proteins [BR:sce03036]
    YBR198C (TAF5)
Transcription machinery [BR:sce03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     YBR198C (TAF5)
   Coactivators
    SAGA/TFTC/STAGA complex
     YBR198C (TAF5)
Chromosome and associated proteins [BR:sce03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     YBR198C (TAF5)
    STAGA complex
     YBR198C (TAF5)
    TFTC complex
     YBR198C (TAF5)
    SAGA complex
     YBR198C (TAF5)
    SLIK complex
     YBR198C (TAF5)
SSDB
Motif
Pfam: WD40 WD40_Prp19 TFIID_NTD2 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd EIF3I WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_TEP1_C ANAPC4_WD40 NBCH_WD40 Beta-prop_DCAF4 Beta-prop_WDR75_1st Beta-prop_RIG_2nd Beta-prop_SPT8 Beta-prop_SCAP WD40_like Beta-prop_IFT140_1st Beta-prop_HPS5 Beta-prop_EIPR1 LisH WD40_RFWD3 Beta-prop_Nup120_160 PROPPIN Beta-prop_WDR19_1st Beta-prop_IP5PC_F RMC1_N PEP5_VPS11_N Nucleoporin_N LisH_WDR26 Cytochrom_D1 Beta-prop_NWD2_C Beta-prop_VPS8 LisH_PAC1 WDR54 LisH_TPL
Other DBs
NCBI-GeneID: 852497
NCBI-ProteinID: NP_009757
SGD: S000000402
UniProt: P38129
Structure
Position
II:complement(616127..618523)
AA seq 798 aa
MSQKQSTNQNQNGTHQPQPVKNQRTNNAAGANSGQQPQQQSQGQSQQQGRSNGPFSASDL
NRIVLEYLNKKGYHRTEAMLRAESGRTLTPQNKQSPANTKTGKFPEQSSIPPNPGKTAKP
ISNPTNLSSKRDAEGGIVSSGRLEGLNAPENYIRAYSMLKNWVDSSLEIYKPELSYIMYP
IFIYLFLNLVAKNPVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSH
KYRITMSKTTLNLLLYFLNENESIGGSLIISVINQHLDPNIVESVTAREKLADGIKVLSD
SENGNGKQNLEMNSVPVKLGPFPKDEEFVKEIETELKIKDDQEKQLNQQTAGDNYSGANN
RTLLQEYKAMNNEKFKDNTGDDDKDKIKDKIAKDEEKKESELKVDGEKKDSNLSSPARDI
LPLPPKTALDLKLEIQKVKESRDAIKLDNLQLALPSVCMYTFQNTNKDMSCLDFSDDCRI
AAAGFQDSYIKIWSLDGSSLNNPNIALNNNDKDEDPTCKTLVGHSGTVYSTSFSPDNKYL
LSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGHYFATASHDQTARLWSCDHIY
PLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVC
PDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADHTVRV
WDLKKATTEPSAEPDEPFIGYLGDVTASINQDIKEYGRRRTVIPTSDLVASFYTKKTPVF
KVKFSRSNLALAGGAFRP
NT seq 2397 nt   +upstreamnt  +downstreamnt
atgtcacagaagcaaagtacgaatcagaatcaaaatggcacgcatcagccacaaccagta
aagaatcaacgaactaataatgctgctggcgccaattccggccagcagccacagcaacag
agtcaaggccagtctcaacagcaggggaggtccaatggtccgttttcggcgtcagacttg
aatagaattgtcctagagtacctgaataaaaagggataccaccgtacagaggccatgctg
agagccgagagtggacgtacactaacacctcaaaacaaacaatcaccagcaaatactaaa
acaggtaaatttcctgaacaatcatcaattcctccgaaccccgggaagacagctaaaccc
ataagcaatccaactaatttgtcatccaagagagatgcagaaggtggtatagtatctagc
gggcgactagaagggctcaacgcacctgaaaattatatacgtgcatattcaatgttgaaa
aactgggtagattcgtcgctggaaatttacaagccggaactaagctacatcatgtaccca
atattcatttatttatttttaaatttggtggccaaaaatcctgtttacgcccgtcgtttc
tttgatagattttctcccgattttaaggacttccatggctcagaaattaatagacttttc
agtgtcaattctatagatcacatcaaggaaaatgaggtcgcaagtgctttccaatctcac
aagtacagaattactatgtctaaaaccactttaaatcttctcttatattttttgaatgaa
aatgagagtattggaggttcattaataattagtgtaataaatcagcacctagatccaaat
attgtagaatcagtaaccgcaagggaaaaattggctgatggaataaaagttctcagtgat
agtgaaaacggaaatggtaaacaaaatttagaaatgaattctgttcctgtcaagctggga
cctttcccaaaagacgaggagtttgttaaggagattgaaactgaattgaaaattaaggat
gatcaagagaaacaactaaatcaacaaactgcaggtgacaattacagtggagccaacaat
agaaccttattgcaagaatataaagctatgaataacgaaaaatttaaggataatactggc
gacgatgataaagacaaaattaaagataaaatcgccaaagatgaggaaaaaaaagagagc
gaattgaaggtggatggtgaaaaaaaagacagcaatttatcttcgccagcacgtgatatt
ttacctttaccaccaaagacggcactagatttgaagttggagattcagaaggtcaaggaa
tctcgtgatgccatcaaactagataatttacagttggccttaccaagcgtgtgcatgtat
acattccaaaacacaaataaagacatgtcatgtttagatttcagtgatgattgtaggata
gcggctgctggctttcaagacagttatatcaagatctggtcactcgacggctcatcactt
aataatcctaacatcgcgttaaataacaacgacaaggatgaagacccaacgtgtaaaact
ttggtggggcacagtggtacagtatattcaacaagtttcagtccggataataagtattta
ctttctggttctgaagataaaaccgtcaggctatggtccatggatactcacaccgcgcta
gtaagctataagggccataatcaccctgtgtgggatgttagtttctccccgctaggccat
tatttcgccactgcatcgcacgaccaaaccgcaaggttatggtcatgcgatcacatatat
ccattaagaatatttgcaggacatttaaatgatgttgattgtgtgtcatttcatccgaac
ggttgctatgtgtttacgggatccagcgataagacgtgtcgaatgtgggacgtttctaca
ggcgactcggttaggttatttcttggacatactgcgcccgtcatttctattgctgtttgt
ccagatggtaggtggttgtccactggtagcgaagatggtattattaatgtatgggatatt
ggtaccggcaaaaggttgaaacaaatgcgtggccatggtaagaatgccatttattcctta
tcatatagcaaagagggaaacgtacttattagtggaggtgccgatcatacagtccgtgta
tgggatttgaaaaaggccactactgagccaagcgcagaaccagatgagccattcattgga
tacttgggtgacgttactgcatctataaaccaagatataaaagaatatggtcgcagaaga
acagtaatacctacaagcgatttagtagcgtcgttctacaccaaaaagacgcctgttttt
aaggtcaagttcagcagaagcaatttagcccttgcaggaggtgctttcaggccataa

  All links  
Gene (34)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (3)   
   PDB (3)   
Protein domain (44)   
   Pfam (44)   
All databases (85)   

Download RDF
DBGET integrated database retrieval system