KEGG   Saccharomyces cerevisiae (budding yeast): YDL111C
Entry
YDL111C           CDS       T00005                                 
Symbol
RRP42
Name
(RefSeq) exosome non-catalytic core subunit RRP42
  KO
K12589  exosome complex component RRP42
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    YDL111C (RRP42)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sce03019]
    YDL111C (RRP42)
Messenger RNA biogenesis [BR:sce03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     YDL111C (RRP42)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     YDL111C (RRP42)
SSDB
Motif
Pfam: RNase_PH
Other DBs
NCBI-GeneID: 851447
NCBI-ProteinID: NP_010172
SGD: S000002269
UniProt: Q12277
Structure
Position
IV:complement(263313..264110)
AA seq 265 aa
MSLSVAEKSYLYDSLASTPSIRPDGRLPHQFRPIEIFTDFLPSSNGSSRIIASDGSECIV
SIKSKVVDHHVENELLQVDVDIAGQRDDALVVETITSLLNKVLKSGSGVDSSKLQLTKKY
SFKIFVDVLVISSHSHPVSLISFAIYSALNSTYLPKLISAFDDLEVEELPTFHDYDMVKL
DINPPLVFILAVVGNNMLLDPAANESEVANNGLIISWSNGKITSPIRSVALNDSNVKSFK
PHLLKQGLAMVEKYAPDVVRSLENL
NT seq 798 nt   +upstreamnt  +downstreamnt
atgtctctttcggtcgccgaaaagtcgtacctatacgattcactagcaagcacgccttca
attaggcccgatggaagactacctcatcaattcagacctatagaaatatttactgacttc
ctaccaagttccaatggatcgtccagaattatagctagtgatggaagtgaatgtatcgtg
agcattaagtccaaagttgtggatcatcatgtggagaatgaactacttcaggtcgatgta
gatatcgcaggccaaagagatgacgcgctggtagtagagacaatcacttctttactgaac
aaggttttgaagtctggtagcggagtagattcctcaaagttgcaattgacaaaaaagtac
agcttcaaaatatttgtcgatgttctggtcatttcatcacattcacacccagtttcttta
atatcctttgctatttattcagcgttgaactccacatacctaccgaaacttatttcagct
tttgacgacttagaggtggaagaacttcctacgtttcatgattacgacatggttaagctt
gacattaatccgcctttagtgtttatattggccgttgtaggcaacaatatgctattggac
cctgcagccaacgaaagcgaagtggccaataatggcctaatcatttcctggtctaatggt
aagattacatcacctatcagatcagtagcattgaatgattcaaacgttaaaagctttaaa
cctcatttgttgaagcaaggtcttgcaatggtggagaaatacgcccccgacgtagtacga
tcactggagaatttataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (14)   
   PDB (14)   
Protein domain (1)   
   Pfam (1)   
All databases (30)   

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