KEGG   Saccharomyces cerevisiae (budding yeast): YJL140W
Entry
YJL140W           CDS       T00005                                 
Symbol
RPB4, CTF15
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03020  RNA polymerase
sce03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    YJL140W (RPB4)
  09124 Replication and repair
   03420 Nucleotide excision repair
    YJL140W (RPB4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sce03021]
    YJL140W (RPB4)
   03400 DNA repair and recombination proteins [BR:sce03400]
    YJL140W (RPB4)
Transcription machinery [BR:sce03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     YJL140W (RPB4)
DNA repair and recombination proteins [BR:sce03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      YJL140W (RPB4)
SSDB
Motif
Pfam: RNA_pol_Rpb4 Rtf2 Spo16_C GAGA_bind Cellulose_synt FYDLN_acid
Other DBs
NCBI-GeneID: 853301
NCBI-ProteinID: NP_012395
SGD: S000003676
UniProt: P20433
Structure
Position
X:150961..151626
AA seq 221 aa
MNVSTSTFQTRRRRLKKVEEEENAATLQLGQEFQLKQINHQGEEEELIALNLSEARLVIK
EALVERRRAFKRSQKKHKKKHLKHENANDETTAVEDEDDDLDEDDVNADDDDFMHSETRE
KELESIDVLLEQTTGGNNKDLKNTMQYLTNFSRFRDQETVGAVIQLLKSTGLHPFEVAQL
GSLACDTADEAKTLIPSLNNKISDDELERILKELSNLETLY
NT seq 666 nt   +upstreamnt  +downstreamnt
atgaatgtttctacatcaacctttcaaacaagacggagaagattgaagaaagtggaggaa
gaagaaaatgcagctactctacaactgggccaggaattccagctgaaacagataaatcat
cagggtgaagaggaggaattgattgccttgaacctaagtgaagccaggttagtaatcaaa
gaagctcttgtagaacgtaggagagcatttaaaagatcgcaaaaaaaacacaagaagaag
catttgaagcacgaaaacgccaatgatgaaactacggcagtagaggatgaagatgatgat
ctggatgaagatgacgtcaacgctgatgatgatgattttatgcattctgaaactagggag
aaggagttggagtctatcgacgttctgttagaacagacaacgggaggaaataataaagat
ttgaaaaataccatgcagtatttaacaaatttctcccgatttagagaccaagaaaccgtc
ggggcagttatacagcttctgaaaagcactgggttacatccttttgaagtggcgcaacta
ggttctttggcctgtgacacagctgatgaagcaaagactttaattccaagcttaaacaat
aaaatatcagacgatgagttggaaaggatactaaaggaattgtcaaacctagaaacactc
tattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (12)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (108)   
   PDB (108)   
Protein domain (6)   
   Pfam (6)   
All databases (141)   

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