KEGG   Saccharomyces cerevisiae (budding yeast): YLR147C
Entry
YLR147C           CDS       T00005                                 
Symbol
SMD3, SLT16
Name
(RefSeq) mRNA splicing protein SMD3
  KO
K11088  small nuclear ribonucleoprotein D3
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03040  Spliceosome
sce04139  Mitophagy - yeast
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    YLR147C (SMD3)
 09140 Cellular Processes
  09141 Transport and catabolism
   04139 Mitophagy - yeast
    YLR147C (SMD3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sce03019]
    YLR147C (SMD3)
   03041 Spliceosome [BR:sce03041]
    YLR147C (SMD3)
   03032 DNA replication proteins [BR:sce03032]
    YLR147C (SMD3)
Messenger RNA biogenesis [BR:sce03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     YLR147C (SMD3)
Spliceosome [BR:sce03041]
 Complex A
  U1 snRNP components
   Sm proteins
    YLR147C (SMD3)
  U2 snRNP components
    YLR147C (SMD3)
 Complex B
  U1 snRNP components
    YLR147C (SMD3)
  U4/U6.U5 tri-snRNP components
    YLR147C (SMD3)
 Complex C
  U2 snRNP components
    YLR147C (SMD3)
DNA replication proteins [BR:sce03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     YLR147C (SMD3)
SSDB
Motif
Pfam: LSM TMEM70
Other DBs
NCBI-GeneID: 850839
NCBI-ProteinID: NP_013248
SGD: S000004137
UniProt: P43321
Structure
Position
XII:complement(434158..434463)
AA seq 101 aa
MTMNGIPVKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMD
QIFVRGSQIKFIVVPDLLKNAPLFKKNSSRPMPPIRGPKRR
NT seq 306 nt   +upstreamnt  +downstreamnt
atgactatgaatggaataccagtgaaattattaaatgaggcacagggacatatcgtttct
ctggagctaacaacgggagcgacttatcgtggtaaacttgttgaaagcgaagatagcatg
aacgtacagctaagagatgtaatagctacagagccccagggggctgtaacacacatggat
caaatattcgtacgtgggtcacagatcaaatttatcgttgttccagatctcttaaagaat
gcaccattattcaaaaaaaactcatcaagacctatgccaccaataagaggacctaagaga
aggtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (5)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (32)   
   PDB (32)   
Protein domain (2)   
   Pfam (2)   
All databases (55)   

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