KEGG   Saccharomyces cerevisiae (budding yeast): YPL022W
Entry
YPL022W           CDS       T00005                                 
Symbol
RAD1, LPB9, RAD12
Name
(RefSeq) ssDNA endodeoxyribonuclease RAD1
  KO
K10848  DNA excision repair protein ERCC-4 [EC:3.1.-.-]
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03420  Nucleotide excision repair
sce03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    YPL022W (RAD1)
   03460 Fanconi anemia pathway
    YPL022W (RAD1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sce03032]
    YPL022W (RAD1)
   03400 DNA repair and recombination proteins [BR:sce03400]
    YPL022W (RAD1)
DNA replication proteins [BR:sce03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    YPL022W (RAD1)
DNA repair and recombination proteins [BR:sce03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    Other NER factors
     YPL022W (RAD1)
SSDB
Motif
Pfam: ERCC4
Other DBs
NCBI-GeneID: 856085
NCBI-ProteinID: NP_015303
SGD: S000005943
UniProt: P06777
Position
XVI:506697..509999
AA seq 1100 aa
MSQLFYQGDSDDELQEELTRQTTQASQSSKIKNEDEPDDSNHLNEVENEDSKVLDDDAVL
YPLIPNEPDDIETSKPNINDIRPVDIQLTLPLPFQQKVVENSLITEDALIIMGKGLGLLD
IVANLLHVLATPTSINGQLKRALVLVLNAKPIDNVRIKEALEELSWFSNTGKDDDDTAVE
SDDELFERPFNVVTADSLSIEKRRKLYISGGILSITSRILIVDLLSGIVHPNRVTGMLVL
NADSLRHNSNESFILEIYRSKNTWGFIKAFSEAPETFVMEFSPLRTKMKELRLKNVLLWP
RFRVEVSSCLNATNKTSHNKVIEVKVSLTNSMSQIQFGLMECLKKCIAELSRKNPELALD
WWNMENVLDINFIRSIDSVMVPNWHRISYESKQLVKDIRFLRHLLKMLVTSDAVDFFGEI
QLSLDANKPSVSRKYSESPWLLVDEAQLVISYAKKRIFYKNEYTLEENPKWEQLIHILHD
ISHERMTNHLQGPTLVACSDNLTCLELAKVLNASNKKRGVRQVLLNKLKWYRKQREETKK
LVKEVQSQDTFPENATLNVSSTFSKEQVTTKRRRTRGASQVAAVEKLRNAGTNVDMEVVF
EDHKLSEEIKKGSGDDLDDGQEENAANDSKIFEIQEQENEILIDDGDAEFDNGELEYVGD
LPQHITTHFNKDLWAEHCNEYEYVDRQDEILISTFKSLNDNCSLQEMMPSYIIMFEPDIS
FIRQIEVYKAIVKDLQPKVYFMYYGESIEEQSHLTAIKREKDAFTKLIRENANLSHHFET
NEDLSHYKNLAERKLKLSKLRKSNTRNAGGQQGFHNLTQDVVIVDTREFNASLPGLLYRY
GIRVIPCMLTVGDYVITPDICLERKSISDLIGSLQNNRLANQCKKMLKYYAYPTLLIEFD
EGQSFSLEPFSERRNYKNKDISTVHPISSKLSQDEIQLKLAKLVLRFPTLKIIWSSSPLQ
TVNIILELKLGREQPDPSNAVILGTNKVRSDFNSTAKGLKDGDNESKFKRLLNVPGVSKI
DYFNLRKKIKSFNKLQKLSWNEINELINDEDLTDRIYYFLRTEKEEQEQESTDENLESPG
KTTDDNALHDHHNDVPEAPV
NT seq 3303 nt   +upstreamnt  +downstreamnt
atgtctcagttattttatcagggcgactctgatgatgagctccaggaggaacttacgagg
cagacaactcaagcatctcaaagttctaaaattaaaaatgaagatgaacccgacgactcc
aatcatcttaatgaggtggaaaatgaagatagcaaagttttagatgacgatgcagtgtta
taccctcttatacctaatgagccagatgacatagaaacgtctaagcccaatattaacgat
attaggccagttgatattcaattgactttaccattgccgtttcagcaaaaagtggtagag
aattcattaattactgaagatgcattaatcataatggggaaaggactaggattgcttgat
attgtggccaatttattgcatgttttagctacaccaacatccattaacggacaactaaag
cgagcgctcgtcctagtgttgaatgcaaaacctatagataatgtaagaatcaaggaggcc
ttagaagagctgtcgtggttctctaatactgggaaggacgacgacgatactgctgtcgag
agcgatgatgaactttttgaaaggccttttaacgtagttaccgcggactcgctgagcatt
gaaaagagaagaaagctatatatttctggcggaatcttgagcattacttctagaattctc
attgtggatctcttatccggcattgttcacccaaatagggttacgggtatgctggtattg
aatgcagactcacttcgacataattcgaatgaatcgtttatattagagatttacaggtct
aaaaatacttggggttttattaaagccttttctgaagcaccagagacgtttgtcatggaa
ttttcacccctcaggacgaaaatgaaagaattacggctaaagaacgttttgctatggccg
aggttcagggtagaggtctcttcctgtttgaatgccactaataagacgtcacacaataaa
gtcattgaagtcaaggtctccttaacaaattccatgtctcagatacagtttggcttgatg
gaatgtttgaaaaaatgtattgctgagttaagcagaaaaaatcctgaactagctctggac
tggtggaatatggaaaatgtcctggatataaactttatcaggtcaattgactcggtgatg
gtgccgaactggcaccgaatttcttatgaatcaaaacaactggttaaggatataagattc
ctacgccaccttttaaagatgctcgtaacttcagacgcagttgacttttttggagagatt
caattaagtttggatgccaataaaccgtcagtatcccgaaaatacagcgaatcaccgtgg
ctattggtcgatgaggcacaattagtcatatcgtatgcgaagaaaagaatattttacaaa
aatgaatatactttagaagaaaatccaaaatgggaacaacttattcatatattacatgat
atttcacatgagagaatgaccaatcaccttcaggggcctactttagttgcctgttccgac
aaccttacatgtttagaactagcaaaggtcttgaatgcctcaaacaaaaaaagaggagta
cgtcaagtgcttctgaataaattgaaatggtacagaaaacagagggaggaaacgaaaaaa
ttggtcaaagaagtgcaaagtcaggacacttttccagagaatgcaacattaaatgtaagc
tcgacattttccaaagaacaagtgaccacgaaaagaagaaggacaagaggtgcttcacaa
gttgcggccgttgaaaagctaaggaatgcaggtaccaatgtagatatggaggtggttttt
gaggatcataagttatctgaagaaattaagaagggaagcggtgatgatttggatgacggt
caggaagaaaatgccgcaaacgattcaaagatttttgaaatacaagaacaggaaaatgaa
atccttatcgatgatggggatgctgaatttgacaacggagaattagagtatgtgggcgac
cttccgcagcacatcacaacccatttcaataaggatttatgggcagaacattgcaacgag
tatgaatatgttgatcgtcaggacgaaattttaatctctacgtttaaaagtctcaatgac
aattgctcattgcaggagatgatgccctcttacattataatgtttgaaccagatatatcg
tttatcaggcagattgaagtttataaggccatagtgaaggatttgcaaccaaaagtatac
ttcatgtactacggtgaaagtattgaagagcaaagtcatttgactgctatcaagagagag
aaagatgctttcacaaagttgattagagagaatgcaaatctgtcccatcactttgaaacg
aatgaagatctttctcactacaaaaatttagctgaaaggaagttgaagctttcaaaatta
cgaaaatctaataccagaaatgcgggtgggcagcagggattccataatcttactcaggat
gtcgtcattgtggatacacgtgagtttaatgcctcattaccaggcttactctaccgatat
ggcataagggttattccttgtatgttgacagtcggcgattatgtgataactcctgatatt
tgtctcgaaagaaaatcgatttctgacttaattgggtcattacagaataacagattagcc
aaccaatgtaaaaaaatgttaaaatactatgcatatccgacactattgattgagtttgat
gaaggacagtcgttttctttagaaccttttagtgaacgtagaaattataagaataaagac
atatcaactgttcatcctatatcaagcaagttatcccaggatgaaattcagctaaaacta
gccaaattagtattgcggtttcccactttaaagattatatggtcttcctcacccctgcaa
actgtaaatataatcctagagttgaaattaggacgtgagcaacctgaccctagtaatgca
gttatattgggaacgaataaagttagatcggattttaatagcactgcaaagggcctgaag
gatggtgataacgagtctaaattcaagagactgttgaatgttcctggagtgtcaaaaatt
gattatttcaatctccgcaaaaagatcaagagcttcaataagcttcaaaagctttcatgg
aatgagattaatgaacttattaatgacgaagatttgacggatagaatatactacttcttg
agaacagaaaaagaagaacaagaacaagagtcaacagatgaaaatcttgaatctcctggt
aagaccactgatgataacgctttacatgatcatcataatgatgttcctgaagcacctgtg
taa

  All links  
Gene (34)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (39)   

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