KEGG   Saccharomyces cerevisiae (budding yeast): YPR107C
Entry
YPR107C           CDS       T00005                                 
Symbol
YTH1
Name
(RefSeq) cleavage polyadenylation factor RNA-binding subunit YTH1
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
sce  Saccharomyces cerevisiae (budding yeast)
Pathway
sce03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sce00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    YPR107C (YTH1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sce03021]
    YPR107C (YTH1)
   03019 Messenger RNA biogenesis [BR:sce03019]
    YPR107C (YTH1)
Transcription machinery [BR:sce03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     YPR107C (YTH1)
Messenger RNA biogenesis [BR:sce03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     YPR107C (YTH1)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 Torus zf-CCCH_2 zf-CCCH_3
Other DBs
NCBI-GeneID: 856222
NCBI-ProteinID: NP_015432
SGD: S000006311
UniProt: Q06102
Structure
Position
XVI:complement(741438..742064)
AA seq 208 aa
MSLIHPDTAKYPFKFEPFLRQEYSFSLDPDRPICEFYNSREGPKSCPRGPLCPKKHVLPI
FQNKIVCRHWLRGLCKKNDQCEYLHEYNLRKMPECVFFSKNGYCTQSPDCQYLHIDPASK
IPKCENYEMGFCPLGSSCPRRHIKKVFCQRYMTGFCPLGKDECDMEHPQFIIPDEGSKLR
IKRDDEINTRKMDEEKERRLNAIINGEV
NT seq 627 nt   +upstreamnt  +downstreamnt
atgagcctaattcaccccgatacagcaaaatatccttttaaatttgaacctttcctcagg
caagagtattcgttttcactcgatcctgacagacctatttgtgaattttacaattctaga
gaaggccctaaatcatgtccgaggggaccgttatgtccaaaaaagcatgtgttaccaata
tttcagaataaaattgtttgtagacattggcttcgagggttgtgcaaaaagaatgaccaa
tgtgaatacttacatgaatacaatcttcgaaaaatgcctgaatgtgtcttcttcagcaaa
aacgggtactgtacacaaagtccagattgtcaatatctacacatagatcccgctagcaag
ataccaaaatgtgaaaattacgaaatgggattctgtcctctggggagttcttgtcctaga
cggcatattaagaaggttttctgtcaaagatacatgaccggattttgtcctttagggaag
gatgaatgtgatatggaacatccacagttcataatcccagatgaaggtagtaaattaaga
attaagagagacgatgagataaataccaggaaaatggatgaagaaaaggaaaggcgttta
aacgcaattataaacggtgaagtttga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   KEGG GENES (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (5)   
   Pfam (5)   
All databases (41)   

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