KEGG   Sorangium cellulosum So ce56: sce9004
Entry
sce9004           CDS       T00634                                 
Symbol
pacI
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
scl  Sorangium cellulosum So ce56
Pathway
scl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:scl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    sce9004 (pacI)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:scl03019]
    sce9004 (pacI)
   03016 Transfer RNA biogenesis [BR:scl03016]
    sce9004 (pacI)
Enzymes [BR:scl01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     sce9004 (pacI)
Messenger RNA biogenesis [BR:scl03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     sce9004 (pacI)
Transfer RNA biogenesis [BR:scl03016]
 Prokaryotic type
  tRNA degradation factors
   sce9004 (pacI)
SSDB
Motif
Pfam: RNB OB_RNB CSD2 S1 DprA_WH OB_Dis3
Other DBs
NCBI-ProteinID: CAN99176
UniProt: A9G9F9
Position
complement(12541444..12543816)
AA seq 790 aa
MRSSSRGDPPTTGSGARRREAVVDLLSSFKRALHANEIAERLGVEPSRYAKLQRLLEELS
LEGSIVALPGQRFRTSQKQVEARGAEREGTLTVHPRGFGFVALGGAADDVYISPEAMGGA
LHGDTVVVRISTRSRRGVEGEIVRVVKRRHARVAGVLRRRGRSAWLEPDDGRVRGPIVIV
PREPGAPLVPPDAEDGAAAVVSIARFPDLAEENPEGVLEAVLGTPGDPNVEVAKILVREG
IEEEHAPEAIAEAEAFGGEVPAEALEGRTDLTHLPMPTIDPEDARDHDDAVWVIREEDGS
YRAWIAIADVSHYVRPGSALDQAALARGNSVYLPDRAIPMLPRALSSNLCSLLPGVIRLC
LCVEVELDATAAVRRARVIEGYIRSIAKLTYPGVARALGFTPEPPRSPEAEALRNDLQVM
WDLARLLRGRRMRRGALDLDLPEAKVVLDPKTGAPVDVQKRSHDPGVAKAYQLIEELMLL
ANETCAQFVVDQGIPTVFRYHAPPDQAKLERFATMCGELGLAFDPEDAADPKRLSVFLKK
LDAHPQKQVLHMLLLRAMKQAVYDVANVGHFGLASSAYLHFTSPIRRYPDITAHRAIRAV
LRGERVDRSEAATERLREAAITASERERKAMEVEREVVDLHRALLMRSRLGDTFEGTVTG
IVGGGVYVNIEDPFVDVLVRMESLGPDQYEIDDEGLRVIGRRSGDRIAIGDAMLVQIEDV
AILRRAVYGRRLAGEPTADEPKPRRLRRDAADARPPRRVKISKSTKPLKGMKTSKRTQGG
KSAKVRKKQR
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgcgttcttcatctcgcggagatcccccgacgaccggctccggcgcgcgccgccgggag
gccgtggtcgacttgctgtcctcgttcaagcgcgccctgcacgcgaacgagatcgccgag
cgcctcggggtcgagccgagccgctacgcgaagctgcagcggctgctcgaggagctgtcg
ctggaaggcagcatcgtggcgctccccgggcagcgcttccgcacgagccagaagcaggtc
gaggcgcgcggcgccgagcgcgaggggacgctgacggtgcacccgcgcggcttcggcttc
gtggcgctcggaggggcggccgacgacgtctacatctcgcccgaggcgatgggcggcgcg
ctccacggcgacaccgtcgtcgtgcgcatctcgacccgctcgcggcgcggcgtggagggg
gagatcgtccgggtcgtcaagcggcgccacgcgcgcgtggcgggcgtgctgcggcggcgt
ggcaggagcgcgtggctcgagccggacgacgggcgcgtccgcgggcccatcgtgatcgtg
ccgcgcgagccgggcgcgccgctcgttccgcccgacgcggaggacggcgccgcggcggtc
gtgtcgatcgcccgcttcccggatctggccgaggagaacccggagggcgtgctcgaggcc
gtgctggggacgcccggcgacccgaacgtggaggtcgccaagatcctggtccgcgagggc
atcgaggaggagcacgcgcccgaggcgatcgccgaggccgaggcgttcgggggcgaggtg
ccggccgaggcgctcgaggggcgcacggacctcacccacctgcccatgccgacgatcgac
ccagaggacgcgcgcgaccacgacgacgcggtgtgggtgatccgcgaggaagacggctcg
taccgcgcctggatcgcgatcgccgacgtctcgcactacgtgcggccgggcagcgcgctc
gaccaggcggcgctcgcgcggggcaactcggtctacctgcccgatcgcgcgatcccgatg
ctgccgcgggcgctgtcgtcgaacctgtgctcgctgctgcccggcgtgatccgcctctgc
ctgtgcgtcgaggtcgagctcgacgcgacggcggcggtgcggcgggcccgcgtcatcgag
gggtacatccgctcgatcgcgaagctcacctaccccggcgtggcgcgcgcgctcggcttc
acccccgagccgccgcgcagccccgaggccgaggcgctcaggaacgaccttcaggtgatg
tgggacctcgcccggctgctccgcggcaggcggatgcggcggggcgcgctcgacctcgac
ctgcccgaggcgaaggtggtgctcgacccgaagacgggcgcgcccgtcgacgtgcagaag
cgcagccacgaccccggcgtggcgaaggcctaccagctcatcgaggagctgatgctcctc
gcgaacgagacgtgcgcgcagttcgtcgtcgaccagggcatccccacggtcttccggtac
cacgcgcccccggaccaggcgaagctcgagcgcttcgcgacgatgtgcggcgagctcggg
ctcgcgttcgacccggaggacgcggccgaccccaagcggctgtcggtgttcctgaagaag
ctcgacgcgcacccgcagaagcaggtgctgcacatgctgctgctccgcgcgatgaagcag
gcggtgtacgacgtcgcgaacgtgggccacttcgggctcgcctcgagcgcgtacctgcac
ttcacctcgcccatccggcggtacccggacatcacggcgcaccgggccatccgcgcggtg
ctgcgcggcgagcgcgtcgacaggagcgaggcggccaccgagcggctgcgcgaggcggcc
atcacggcgtcggagcgcgagcgaaaggcgatggaggtggagcgcgaggtggtcgacctg
caccgcgcgctgctcatgcgctcccggctcggcgacaccttcgagggcaccgtcacgggc
atcgtgggagggggcgtctacgtcaacatcgaggatcccttcgtcgacgtgctcgtccgc
atggagtcgctcggcccggatcagtacgagatcgacgacgaggggctgcgcgtcatcggc
cgccgctcgggggaccggatcgcgatcggcgacgcgatgctcgtgcagatcgaggacgtg
gccatcctccggcgcgccgtctatggccggcgcctcgccggcgaaccgaccgccgatgag
ccgaagccgcgccggctgcggcgcgacgcggcggacgcacggcccccccgtcgtgtcaag
atcagcaagagcaccaagcccctgaagggcatgaagaccagcaagcgcacccaaggcggc
aagagcgccaaggtgcgaaagaagcagcggtag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (26)   

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