KEGG   Spiroplasma clarkii: SCLARK_001788
Entry
SCLARK_001788     CDS       T05330                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
scla  Spiroplasma clarkii
Pathway
scla03030  DNA replication
scla03410  Base excision repair
scla03420  Nucleotide excision repair
scla03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:scla00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SCLARK_001788 (ligA)
   03410 Base excision repair
    SCLARK_001788 (ligA)
   03420 Nucleotide excision repair
    SCLARK_001788 (ligA)
   03430 Mismatch repair
    SCLARK_001788 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scla03032]
    SCLARK_001788 (ligA)
   03400 DNA repair and recombination proteins [BR:scla03400]
    SCLARK_001788 (ligA)
Enzymes [BR:scla01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SCLARK_001788 (ligA)
DNA replication proteins [BR:scla03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SCLARK_001788 (ligA)
DNA repair and recombination proteins [BR:scla03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SCLARK_001788 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SCLARK_001788 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     SCLARK_001788 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SCLARK_001788 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT BRCT_2 YcaO_C
Other DBs
NCBI-ProteinID: ARU92233
Position
complement(1471051..1472577)
AA seq 508 aa
MIADLDDYVEIRGEVFLNKTEFNKINAQRKAKDEPLFANPRNAAAGTVRQLDSSIAAERN
LDAFLYYYMNREKISTHSQSMTHLQSMNFKVNNLGQHCPDIQAVIEHVNYLNTLRHDLDY
EIDGVVIKVNEFDLYEEIGYTSKFPKWAIAFKFPAEVKTTKLLDIFPTVGRTGRITYNAV
LEPVGLAGTTVQAATLHNADFIVERDIRVGANVKVKKAGDIIPEIIEPIKDENFVNLPIW
QESQNCPECNSPLERTVGEVDQYCINSSCPRKIIRSLEHFASREAMNIEGLSIKIIEKLY
ENGFVKNIADIYKLKTVRTNLLELDNMGEKSVDNLLQAIENTKQNSAEKLFFGLGIRYVG
KKTAQLLVINFKSILNLKNQDFDTIATIHDIGPTVSQAVVDWFKVQANLDLVTELQSLGL
NTDYLGNVGSKFNEEISNKSFVITGTLSKPRNHFKSILEEHGAKVIDSVSKKTDYLLAGS
EAGSKLEKAQKLNVKIINEEEFKELIGE
NT seq 1527 nt   +upstreamnt  +downstreamnt
atgatagcagatttagatgattatgttgaaattaggggagaggtctttttaaataaaact
gaatttaacaaaattaatgctcaaagaaaagcaaaagatgaaccactatttgccaatccc
cgaaatgcagcagctggaactgtgcgtcaattagactcaagtattgctgcagaaagaaat
ttagatgcttttttgtattattacatgaatcgtgaaaaaatttcaactcatagtcaatca
atgacacacttgcaatcaatgaatttcaaagtgaacaatttaggccaacattgcccagat
attcaagctgtaattgaacatgttaattacttaaacactttaagacatgatttggactat
gaaattgatggagttgttattaaggttaatgagtttgatttatatgaagaaattggttac
acatcaaaatttcccaagtgagctattgcctttaaatttccagcagaggttaaaaccacc
aaactccttgatatctttccaactgtagggagaactgggagaattacttataatgcagtt
ctagaaccagtgggtttggcaggaactacagtgcaagcagccactttacataatgctgat
tttattgtggaaagagatattagagttggagcaaatgttaaagttaaaaaagcaggagac
attattccagaaattattgaaccaataaaggatgaaaattttgttaatttacctatttga
caagaaagtcaaaactgtccagagtgtaactctcccttagaaagaacagttggtgaagtg
gatcaatattgtattaacagttcttgtccaagaaaaatcatccgttcattagaacatttt
gccagtcgtgaagctatgaacattgagggtttaagtattaaaattattgaaaaactttat
gagaatggttttgttaaaaacattgcagatatttataaactaaaaacagttagaaccaat
ttactagaattagataatatgggagaaaaatcagttgataatttattgcaagccattgaa
aatactaaacaaaattctgctgaaaaacttttctttggtttaggaattagatatgttggt
aaaaaaacagcccagttattggtaataaactttaaatcaattttaaacttaaaaaatcaa
gattttgacacaattgccactattcatgatattggaccaactgtttcacaagctgtggtt
gactgatttaaagtccaagccaacttggacttagttactgagttgcaaagtttaggcttg
aatactgattatttaggtaatgttggttcaaaatttaatgaagaaatttcaaataaaagt
tttgtaattactggaactttatcaaaacctcggaaccactttaaaagtattttagaagaa
catggagcaaaagtaattgatagtgtcagcaaaaaaactgattatttactggcaggaagt
gaagctggaagtaaattagaaaaggcccaaaaattaaatgttaaaataatcaatgaagaa
gaatttaaagaacttataggagaataa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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