KEGG   Solitalea canadensis: Solca_1673
Entry
Solca_1673        CDS       T02084                                 
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
scn  Solitalea canadensis
Pathway
scn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:scn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Solca_1673
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scn03400]
    Solca_1673
Enzymes [BR:scn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Solca_1673
DNA repair and recombination proteins [BR:scn03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Solca_1673
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 DNA_ligase_C
Other DBs
NCBI-ProteinID: AFD06739
UniProt: H8KQK1
Position
complement(2018048..2020480)
AA seq 810 aa
MPKLKEYIDKRNFSQTKEPVGGDVTGKKLAFVVQRHHASRLHYDFRLQMKGVLKSWAVPK
GPSLNPQDKRLAMMVEDHPLDYKDFEGEIPKGNYGAGNVHIWDEGYYIPIADYKDPEKGL
LAELKSGNLKIILMGKRLKGEFAIVKIKSDEENAWLLIKHKDKYAVNKDYDSEDFVAAKI
KNKKNITSEQTATKKKSVRTHTTIKPITPMMATLGSDMVKGDDWIFEPKLDGYRIVAITD
GYHNSKLFTRNQLDYTSKYENVAEILKKLDRACVLDGEVVKLNDDGKPSFNALQLFGKNP
VGKVHYYVFDLLQLDEHSLLEMPLTDRKKILEALVKSIDSPYIIFTPYESGNGNKLLEEA
RKNNSEGIMAKKADSIYHPGYRTKEWIKLKVNQEDEFIIGGYTEPRGKKGLIGAFLLGEN
KNGNLTFSGKCGTGLDELRDQEIYATLKDYEITKSPFTTKITNDTKIHWLKPELVCTVKY
SERTEDGKLRHPVFKALREDKTVTDMKPAEDNYEIKANGNKVTITNRNKVYFPDNGITKG
DVVDYYDTIADYILPYLKDRPLSLHRHPNGINAPSFFQKDIETKSYNWLKTVSIHSESND
KDIDYLVCNDKKTLLYMANLGCIEINPWLSRYPGIEKPDFLVLDLDPEQIGFESVIEVAL
TIKELLDSLSIPSYPKTSGSTGIHIYIYTGAKYHYDSVKLFAEWLAGKAHELIPSISSIE
RSPQKRQKKVYIDFLQNRKGQTIAAAYSLRPKPGATVSWPLSWDEVTKELKMEDYTIKNV
PSLLTKRKNPWADIYSSTVNIAAIMKKLQV
NT seq 2433 nt   +upstreamnt  +downstreamnt
atgcccaaacttaaggagtatattgataagcgcaacttctcacaaaccaaagaaccagtg
ggtggagatgttacgggcaaaaaattagcttttgttgtacagcgtcaccatgcttcccgg
ttgcattatgattttcgcttgcaaatgaagggtgtgctaaaaagttgggctgttcctaaa
ggcccttccttaaatccacaggataagcgattggccatgatggtagaagatcatcccttg
gattataaagactttgagggagaaatccctaaagggaattatggagccggaaatgtacac
atctgggatgaagggtattatattccaattgcagactataaagatcccgaaaaggggtta
ctcgcagaacttaaaagtggcaatctgaagattatcctgatggggaaacgactcaaagga
gaatttgccatcgtaaagattaagtcggatgaggaaaatgcgtggttgttaataaagcat
aaagataaatatgctgtaaataaggattacgacagcgaagactttgtagctgcaaaaatt
aaaaataaaaagaacatcacttcggagcaaacagcaacaaaaaaaaagtccgttagaacc
catactacaataaaaccaattacccccatgatggccacacttgggtctgatatggtaaaa
ggtgatgattggatatttgaacctaagttagatggctatagaatagttgccattacagat
ggttaccataacagtaaattatttactaggaatcaattagactatacgtcaaaatacgaa
aacgtggcggagatcttaaaaaaactcgaccgggcatgcgttttggacggagaagttgta
aagttgaatgatgatggtaagccaagttttaatgcattacaactctttggcaaaaatccc
gtagggaaagttcattattatgtgtttgacctgctgcaacttgatgaacattcattgctt
gaaatgcccttgactgatcgtaaaaagattttggaggcgcttgttaagtcgattgactca
ccctatatcattttcacaccctatgaatcgggtaacgggaataagcttttagaagaggcc
cggaagaacaacagtgaaggcattatggctaaaaaagccgatagcatttaccacccgggt
taccggactaaggaatggatcaaactaaaggtgaaccaggaagatgagtttataattggt
ggatatactgaacctcgcgggaaaaaaggtcttattggtgcttttttattgggtgaaaat
aaaaacgggaacctgaccttttccggaaaatgtggaacaggcttagatgagttgcgcgat
caggagatttatgctacactgaaggattatgaaataactaaatctccattcacaacaaaa
attaccaatgatactaaaatacattggctgaaaccagaattagtttgtacggtcaaatac
tcggagcgtacggaggacggaaaacttaggcatcctgtttttaaagctttaagagaagac
aaaactgttacagatatgaaaccagcggaagataattatgaaattaaggctaatggtaat
aaagtaactatcacgaatcgaaacaaggtttattttccggataatggtattaccaaaggt
gatgttgttgattattatgatactatagctgattatattctcccctatcttaaagatcgc
ccattaagtttacatcgccatcctaatggcatcaatgcgccaagcttctttcagaaagac
attgaaactaaatcctacaattggctaaaaactgtttcaatacactctgagagtaatgat
aaagacattgattatttagtatgcaatgacaaaaaaacattgttgtacatggctaattta
ggttgcatcgaaataaacccatggctatcaaggtatcctggaattgaaaagcctgatttt
ttggtattggatctcgatccggaacagattggttttgaaagtgttattgaagtcgcatta
acaattaaagagcttttggattccttatcaataccatcctacccgaaaacttcaggttcc
acaggaattcatatttatatatataccggtgctaagtatcactatgacagtgtaaaactg
tttgcagaatggctggcaggtaaggcgcatgagctaattccatccatttctagtattgag
cggagtccgcaaaaacgacaaaaaaaagtgtatatcgatttccttcaaaatcgtaagggg
caaaccattgctgctgcctatagtttacgccctaaaccaggtgcaactgtttcctggcca
ttatcatgggatgaagtaactaaagaacttaaaatggaggattatacgattaaaaacgtt
ccgtcattattaaccaaacgaaaaaatccttgggcagatatttattcttctacggtaaat
attgcagctattatgaagaagttgcaggtgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (37)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (59)   

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