KEGG   Streptomyces sp. CFMR 7: ABE83_34900
Entry
ABE83_34900       CDS       T04074                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
scz  Streptomyces sp. CFMR 7
Pathway
scz03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:scz00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    ABE83_34900
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scz03400]
    ABE83_34900
Enzymes [BR:scz01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     ABE83_34900
DNA repair and recombination proteins [BR:scz03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     ABE83_34900
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_OB_2 RNA_ligase
Other DBs
NCBI-ProteinID: ALC32370
UniProt: A0A0M4ECV1
Position
unnamed:complement(72812..73744)
AA seq 310 aa
MLATPGPLPSAAVEDRWAFEVKQDGQRAMIYLPGDGTVLLRARSGTDITSAYPELLPLAQ
ALGARSAVLDGEIVALDEQGRSDFERLQQRMGLAGAPARAARLAARVPVHLALFDVVHLD
GRPVTGVPYAERRELLEGLGLAGPGWSTPAAITGHGAQAWEMAKDAGLEGLIAKRLTSRY
EPGARSKAWVKIKVHRLADVVIGGWIPGRGRLTGLPGAVLVGERREGLLHYAGRVGTGWS
HTERTHLARLLQAAANDTCPFTQVPPVAGARWVLPQLVGEVRYTSRTHAGRLRHPSWHRL
RPDLTPDDLG
NT seq 933 nt   +upstreamnt  +downstreamnt
atgctcgccacacccggcccgctgccgtcggcggctgtggaggaccggtgggcattcgag
gtgaagcaggacggccagcgggccatgatctacctgccgggcgacggcacggtcctcctg
cgcgcacgatcaggtacggacatcacctccgcctaccccgaactcctccccctcgcccag
gccctcggcgcgcggagcgccgtgctggacggggagatcgtggcgctcgacgagcagggc
cgcagcgacttcgagcgcctccagcagagaatggggctcgccggtgcccccgcccgggcc
gcgcgcctggcggcccgggtgccggtgcacctggcgctcttcgacgtcgtccacctcgac
ggccgccccgtgaccggcgtgccgtacgcggagcggcgggaactgctggaaggcctcggg
ctggccgggcccggctggtcgacgcccgcggcgatcaccgggcacggcgcccaggcctgg
gagatggccaaggacgccgggctggaggggctgatcgcgaaacggcttacctcccggtac
gagcccggggcacggtcgaaagcctgggtgaagatcaaggtccaccgcctcgccgatgtc
gtgatcggcgggtggatccccggacgcggacggctgaccggtctgccgggtgccgtcctg
gtcggcgagcggcgcgaggggctgctgcactacgcgggccgcgtcggcaccggctggagc
cataccgaacgcacccacctcgcccgactcctccaggccgcagccaacgacacctgcccc
ttcacacaggtgcccccggtggccggggcccggtgggtactcccccagctcgtcggcgag
gtccgctacacctcccgcacccacgccggacgcctgcgtcacccctcctggcaccggcta
cgccccgacctcacccccgacgacctgggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system