KEGG   Saccharophagus degradans: Sde_1611
Entry
Sde_1611          CDS       T00335                                 
Name
(GenBank) bacterial nucleoid protein HU beta subunit
  KO
K03530  DNA-binding protein HU-beta
Organism
sde  Saccharophagus degradans
Brite
KEGG Orthology (KO) [BR:sde00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sde03032]
    Sde_1611
   03036 Chromosome and associated proteins [BR:sde03036]
    Sde_1611
   03400 DNA repair and recombination proteins [BR:sde03400]
    Sde_1611
DNA replication proteins [BR:sde03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    Sde_1611
Chromosome and associated proteins [BR:sde03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    Sde_1611
DNA repair and recombination proteins [BR:sde03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      Sde_1611
SSDB
Motif
Pfam: Bac_DNA_binding HU-HIG HU-CCDC81_bac_2 HU-CCDC81_euk_2 HU-CCDC81_euk_1 HU-CCDC81_bac_1 HU-DNA_bdg
Other DBs
NCBI-ProteinID: ABD80873
UniProt: Q21KA6
Position
2072231..2072503
AA seq 90 aa
MNKSELIEAIAASADISKAAAGRALDAVTESIGEALKNGDQVALVGFGTFLVKERAARTG
RNPQTGAPIEIAAAKIPSFKPGKALKDAVN
NT seq 273 nt   +upstreamnt  +downstreamnt
gtgaataagtcagaattgattgaagcgattgcagcttctgcggatatttccaaagctgct
gctggtcgtgcattagacgcagtaactgaatcaatcggtgaagcgttaaagaacggtgat
caggttgctctagttggctttggtactttcctagttaaagagcgtgctgctcgtactggt
cgcaacccacaaactggtgcaccaatcgaaatcgccgctgctaaaatacctagctttaag
ccaggtaaagcgttaaaagacgccgtaaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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