KEGG   Saccharophagus degradans: Sde_2164
Entry
Sde_2164          CDS       T00335                                 
Name
(GenBank) RNA polymerase sigma factor, FliA/WhiG
  KO
K02405  RNA polymerase sigma factor FliA
Organism
sde  Saccharophagus degradans
Pathway
sde02020  Two-component system
sde02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:sde00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Sde_2164
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Sde_2164
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sde03021]
    Sde_2164
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:sde02035]
    Sde_2164
Transcription machinery [BR:sde03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Sde_2164
Bacterial motility proteins [BR:sde02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    Sde_2164
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 HTH_23 DUF4358 GerE HTH_38
Other DBs
NCBI-ProteinID: ABD81424
UniProt: Q21IQ5
Position
complement(2756990..2757742)
AA seq 250 aa
MAVSVAENLMVYEKPKEGDQEIKVEDYAYLVKRIAHHMMARMPSCVQIEDLIQAGMLGLL
EAAQKYDASKGASFETYSGIRIRGAIVDEMRRGDWAPRSVHRNSRRVAEAIATVEARHGR
DARDHEIAEEMGLSLDEYYAMARDSASTRLFSYEETYENDESRFDEYEPSDGLRGPSEQV
HRNALYTDLVAAIGKLPERERLVLSLYYEQEMNLKEIGLVLGVSESRVSQIHSQAALRLK
SRMQDWQSYE
NT seq 753 nt   +upstreamnt  +downstreamnt
atggcagtctcagtggcagaaaatttgatggtctacgaaaaacctaaggaaggagaccaa
gaaataaaggtagaggattacgcctatctcgtgaaacgtatcgcccatcatatgatggcg
cgcatgccttcgtgcgttcaaatagaagatttaattcaagcgggcatgctggggctgcta
gaagcagcacaaaaatatgacgccagtaaaggcgcaagcttcgaaacctattctggaata
cgcattcgcggtgccattgtagatgaaatgcgccgcggagactgggcgcctaggtctgta
catcgcaacagtcgacgtgtagcagaggcaatagccacagtagaggctcgccatgggcgc
gatgcacgcgaccacgaaatagcagaagagatgggtttaagccttgacgagtactacgct
atggcgcgcgatagtgcatctactcgcctgtttagctacgaagaaacctacgaaaacgat
gagtcgcgctttgacgaatacgagcctagtgacggtttgcgcggcccctccgaacaagtt
caccgtaatgccctctacaccgatttagtggccgccattggcaaattgccagagcgagag
aggcttgtgctatcgctgtattacgaacaggaaatgaacctaaaagaaattgggctagta
cttggtgtatctgaatctagggtaagccaaatccacagtcaggctgctttaaggctcaaa
tcccgcatgcaagattggcaatcgtacgaatga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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