KEGG   Saccharophagus degradans: Sde_3681
Entry
Sde_3681          CDS       T00335                                 
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
sde  Saccharophagus degradans
Pathway
sde03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sde00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Sde_3681
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sde03400]
    Sde_3681
Enzymes [BR:sde01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Sde_3681
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Sde_3681
DNA repair and recombination proteins [BR:sde03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Sde_3681
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS zf-dskA_traR
Other DBs
NCBI-ProteinID: ABD82936
UniProt: Q21EE3
Position
4664020..4664835
AA seq 271 aa
MPELPEVETTRRGILPHLEGKRVKAVSVRNRSLRWPIPADLAQQIQNKTLRTIHRRGKYL
LLEFANGHVIWHLGMSGSLRIIKADEPPMVHDHVDIAFGGNLALRYTDPRRFGAVLWTNE
AILEHKLLNHLGPEPLTDAFNSAYLFDKSRKRSQSVKTWIMDSKVVVGVGNIYANEALFN
SAIHPLKAAGKLSQKQCDIFCSEIKSVLAKAIEQGGTTLRDFVGGDGKPGYFAQELNVYG
RGGKACKKCRKPLTEKKLGQRTTVYCTHCQK
NT seq 816 nt   +upstreamnt  +downstreamnt
atgccagagttacccgaagtagaaaccacccgccgcggtatactcccccacctagaaggc
aaacgcgttaaagccgttagcgtgcgcaatcgctccctgcgctggcccatcccagcagac
ctagcccaacaaattcaaaacaaaaccctgcgcactattcaccggcgcggtaaataccta
ctgcttgagtttgccaatgggcacgttatttggcacttggggatgtctggcagtttacgc
attattaaggccgacgaaccacccatggtacacgaccacgtggatatagcatttggcggt
aacctcgccctgcgctacacagatccgcgccgatttggcgccgtattatggacaaacgaa
gccattctcgagcacaagctactcaaccacctcgggccagaaccactaaccgacgcattc
aacagcgcctacctgttcgataaaagccgcaagcgcagccaaagtgttaaaacgtggatt
atggacagcaaggtagtggttggggtgggcaacatttacgctaacgaagctttatttaac
tctgctattcacccactaaaagccgcgggtaaactcagccaaaagcagtgcgatattttt
tgtagcgaaattaaaagcgtgcttgccaaagccatagaacaaggcggtacaacgctaaga
gactttgtaggcggagatggtaaaccgggttattttgcgcaggaactaaacgtatacggc
cgtgggggcaaggcctgtaagaaatgccgcaaacctcttacagaaaaaaaactagggcag
cgcaccaccgtgtactgcacccattgccaaaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (2)   
   KEGG ENZYME (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (34)   

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