KEGG   Shewanella denitrificans: Sden_1009
Entry
Sden_1009         CDS       T00344                                 
Name
(GenBank) tRNA pseudouridine synthase B
  KO
K03177  tRNA pseudouridine55 synthase [EC:5.4.99.25]
Organism
sdn  Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:sdn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sdn03016]
    Sden_1009
Enzymes [BR:sdn01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     Sden_1009
Transfer RNA biogenesis [BR:sdn03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    Sden_1009
 Prokaryotic type
    Sden_1009
SSDB
Motif
Pfam: TruB_N TruB_C_2 TruB-C_2 Nrd1-Seb1_dom2
Other DBs
NCBI-ProteinID: ABE54297
UniProt: Q12QH9
Position
1149757..1150710
AA seq 317 aa
MARRSKGRQIDGIVLLDKDTGMSSNYALQRVKRFFNANKAGHTGALDPLATGMLPICLGE
ATKFSQHLLDADKRYLVTAKLGVRTDTSDSDGEVVQTRDINFTQAQLETALEHFRGDTMQ
VPSMFSALKHQGQPLYKYAREGIEVPREARPITVFELNFIKLEGDELTLDIHCSKGTYIR
TITDDLGEMLGCGAHVIMLRRTQVADYPYDKMVSLADLEALVTQAQQQELAVGELLDPLL
LPMDTAVANFPEINLPESMLYYVMQGQAVQASGLKIDVLVRITIGEQRKFVGIGIMNDDG
LLAPKRLIVIPAEESPE
NT seq 954 nt   +upstreamnt  +downstreamnt
atggcacgtcgctccaaaggtcgccaaatcgacggtatagtcttactcgataaagacacg
ggcatgagttcaaactatgcactgcaacgagtaaaacgtttttttaacgccaataaagcc
ggccatacaggggcgctcgatccattagcgacaggtatgctgcctatctgtttaggcgaa
gccaccaagttctctcagcatcttttagatgccgacaagcgttacctagtgacggcgaaa
cttggggtgcgtactgacaccagcgattccgacggtgaagtggtgcaaacccgggacatt
aattttactcaggcacagcttgaaacggcgcttgagcatttccgtggtgataccatgcaa
gtgccttcgatgttctcagcccttaaacatcagggtcagcctttgtacaagtatgcccgt
gaaggcatagaagtcccaagggaagcgcgtcccattactgtatttgagcttaattttatt
aagcttgaaggggatgagttaaccttagatattcattgctctaagggcacttatattcgc
accatcaccgatgatttaggtgagatgctaggttgtggtgctcacgttatcatgctgcgt
cgcacccaagtggctgactatccttatgataaaatggtgagccttgcagatcttgaagcc
ttggtaactcaagcgcagcagcaggaattggccgtaggcgagttactcgaccccttgcta
ttgcctatggataccgcggtggctaatttccctgagattaacctgccagaatccatgctt
tattacgtgatgcaaggtcaagctgtgcaggcgtctggccttaaaattgacgtattagtg
cgtatcactattggtgaacagcgtaagtttgtgggcattgggataatgaatgacgatggt
ttgcttgcgcctaagcgcttgattgttattccagcggaagaatcaccagagtaa

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