KEGG   Shewanella denitrificans: Sden_1237
Entry
Sden_1237         CDS       T00344                                 
Name
(GenBank) restriction modification system DNA specificity domain
  KO
K01154  type I restriction enzyme, S subunit [EC:3.1.21.3]
Organism
sdn  Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:sdn00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:sdn02048]
    Sden_1237
Enzymes [BR:sdn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Sden_1237
Prokaryotic defense system [BR:sdn02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Sden_1237
SSDB
Motif
Pfam: Methylase_S YdaT_toxin DUF5907
Other DBs
NCBI-ProteinID: ABE54523
UniProt: Q12PV3
Position
1442046..1443947
AA seq 633 aa
MADLSTPTNDGQSEQAAESLITNHIDIWTTAIERKSSAGRGSSNKFSLYGIKKLRELILE
LAVRGKLVPQASFDEINSPDYEPASVLLERIAAVKAQLVKEGKLKKQKPLPEIGDNEKPF
ELPNGWKWSRLGDFVSIIRGITFPSSEKHRELAPSRVACIRTTNVQDSLEWDDLLYVDRS
YVKREEQYLKLGDIVMSMANSRELVGKVSFITHIPVGESSFGGFLSVIRPYQFDASFLMS
VLRAPLTKNELIGSASQTTNIANISLEKLNPLVIAVPPLEEQHRIVAKVDELMSLCDALE
AQTEASIAAHQTLVETLLNALLLPNTSQPADSQSASLEPALNDSLIDNWERVAEHFDTLF
TTAASIDTLKQTILQLAVMGKLVPQASLAERNSPDYEPAAKLLKRIKAEKAQLIKDGKIK
KQKPLPDITDEEKPFELPESGEWVRLGDLCTLVTSGSRGWKTYYAESGATFIRSQDIKYD
RVEFDDKAYVKLPETTEGKRTKVDVGNLLMTITGANVAKTAIVEIELDEAYVSQHVALIK
LINSVMNKYIHLWLTGAFGGRGLLLECSYGAKPGLNLQNINELIIPIPPLEEQHRIVAKV
EELMALCDKLKARLSDAQTTQLHLTDAIVEQAV
NT seq 1902 nt   +upstreamnt  +downstreamnt
atggctgatttatcaacacctaccaacgacggtcaatcagagcaagcagcagaaagctta
atcaccaaccatattgatatttggacgaccgccattgagcgaaaatcctctgcagggcgc
gggtcatcaaataagttttccttgtatggcattaaaaaactgcgtgagctgattttagag
ctcgccgtgcgcggtaagttagtaccgcaggccagctttgatgagataaatagtccagat
tatgagccagcgtcagtattactcgagcgtattgccgctgtaaaagcccagttggtgaaa
gagggcaagcttaaaaaacaaaagcctttgcctgagattggtgacaatgaaaagccgttt
gaattaccaaatggatggaagtggagtcgactcggtgattttgtttcaatcataagagga
ataacattcccttcaagtgaaaagcacagagagttagcgccatctagagtagcttgcatt
aggactacaaatgttcaagatagtcttgaatgggatgatttactgtatgttgataggagt
tatgttaagcgtgaagaacaatatctaaagttaggggatattgttatgtctatggcaaac
agtagagagttagtcggaaaagtatcttttataacacatattcctgtcggtgaatcatca
tttggtggcttcttaagtgtaattaggccatatcaatttgacgctagctttttaatgtca
gtcctgagagctcctttgacaaaaaatgaattaattggcagtgcaagtcaaactacaaat
attgctaatatttccttagaaaagttaaatcctctagttattgctgtacctccactcgaa
gaacaacaccgtatcgtcgctaaagttgatgagttaatgagcttgtgtgatgccctcgaa
gcgcaaaccgaagcgagcattgcggcacatcaaaccttagtagaaaccttgctgaatgca
ctgttactgcctaacacttctcagccagcagatagccaatcagccagcctcgagcctgca
cttaatgatagtttaatagacaactgggagcgtgtcgccgaacacttcgacacgctattc
accaccgcagccagcatcgacaccctaaaacaaaccatcctccaactcgccgtcatgggt
aagttggtgccacaagccagcttagctgaaagaaacagtccagattatgaacccgccgcc
aagctactgaagcggatcaaagctgaaaaagctcaactgattaaagacggtaaaataaaa
aaacagaaaccactgcccgacatcacagatgaagaaaaaccgtttgaactgcctgaatct
ggtgagtgggtgagacttggtgatttatgtacgcttgtaacaagcgggtctagaggttgg
aaaacatattacgctgaaagtggcgctacatttattcgttctcaagatatcaaatacgat
agggtagaatttgacgataaggcatatgtaaagctacctgaaactactgaaggtaaaaga
actaaagttgatgttggtaatctactgatgactatcactggtgcaaatgttgccaaaact
gcaatagtagagattgaacttgatgaggcttatgttagtcagcatgtagcactaataaaa
ctgattaacagtgttatgaataagtatattcatctttggttaaccggagcatttggaggt
cgaggattattattagaatgtagctatggcgcaaagccaggacttaatcttcaaaatatt
aacgagttgattatacctatacccccactagaagaacaacatcgcatcgtagccaaagtc
gaagagctaatggcactctgcgacaaacttaaagcccgtttaagtgacgcccaaacaact
caactccacctcaccgacgccatcgtcgaacaggctgtgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

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