KEGG   Shewanella denitrificans: Sden_1569
Entry
Sden_1569         CDS       T00344                                 
Name
(GenBank) DNA polymerase III, alpha subunit
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
sdn  Shewanella denitrificans
Pathway
sdn03030  DNA replication
sdn03430  Mismatch repair
sdn03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sdn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Sden_1569
   03430 Mismatch repair
    Sden_1569
   03440 Homologous recombination
    Sden_1569
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdn03032]
    Sden_1569
   03400 DNA repair and recombination proteins [BR:sdn03400]
    Sden_1569
Enzymes [BR:sdn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Sden_1569
DNA replication proteins [BR:sdn03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Sden_1569
DNA repair and recombination proteins [BR:sdn03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Sden_1569
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 DNA_pol_IIIA_C tRNA_anti-codon Rad51
Other DBs
NCBI-ProteinID: ABE54854
UniProt: Q12NX2
Position
1823085..1826564
AA seq 1159 aa
MTDPRFVHLRVHSDFSMTDGVAKVKPILAEAERQGMAAIALTDQNNFCGLVKFYGGCHNA
GIKPIVGADFWMQVPGFDKELCALTIIAMDNHGYQNLTQIISQAYLRGQINGRVVIDQDW
LVTYNQGILVLSGAKEGDVGKALLKGNLPQVDSLIQFYQTHFDGRYFLELIRTGRSDEER
YLHMAVNLAKERDLPVVATNQVVFLKADDFESHEIRVAISDGYTLADPRRPKTYSAEQYL
RSEEEMCALFSDIPSALSNSVEIAKRCNVTIRLYEYFLPNFPTGDLSTEDFLVVVSEKGL
EERLEFLFPDEQVRAQRRGEYDERLAIELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAD
LYGREAVSQIITFGTMAAKAVVRDVGRVLGHPYGFVDRISKLIPAEPGMTLAKAFEVEPA
LQESYDGDEDVKELIDMCRRLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGNNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALEMVNKVQLQNGLDPIRIEAIPLDDPKCFKLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDAQYQHESLRELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAINNGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
QFMAAVMSADMDNTDKIVTLVDECERMGLPLIPPDVNKGLFKFTVDEAFNIVYGIGAIKG
VGEGPVESILEARVNGPFTDLFDFCARVDLKKLNKRIIEKLICAGALDSLGPHRASMMAT
LPQAISAAAQHAKAEAIGQHDMFGLLNSEPEDNKQQFVECMPWPDKIWLEGERDTLGLYL
TGHPINQYLKELKQYTSGRLKDVHPTERGKTAKAAGLVVATRVMLTKRGAKMGLVTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSYDDFAGGNRMTARNIIDIGEARSHFAR
AVELRLAAERVPDEAWLEQFKATLEPWKGGAVPVVIDYMQEGTRASFTLGAAWQVNPSDE
LMLALESLLGSENVKLKFD
NT seq 3480 nt   +upstreamnt  +downstreamnt
atgaccgatcctcgttttgttcatttacgcgtccacagtgatttctccatgactgatggt
gtcgccaaggtcaagcccatactcgccgaggcggaacgccaagggatggccgctattgcc
ttaacggatcaaaataacttttgtggtctggttaaattttatggtggctgccataacgcc
ggcatcaagcccatagtgggcgccgatttctggatgcaagtgccaggtttcgataaagag
ctctgtgcgctaactattatcgccatggataaccatggttatcaaaacctgactcaaatc
atcagccaagcttatttgcgcggccagatcaatggcagggtggtgatagatcaagactgg
ttggtgacttacaatcaagggattttagtcttgtctggcgccaaagagggcgatgtgggc
aaggcgttgcttaaggggaatcttccccaagtagactccttaatccagttttaccagacg
catttcgatggccgttattttctagagcttattcgcacaggccgcagcgacgaagaacgt
tacttgcatatggcggttaatctagccaaggaacgtgatttgcctgtggtggccaccaat
caggtggtgttccttaaggctgatgatttcgagtcccatgaaatccgcgttgccattagt
gatggctataccttagccgatcctcgccggccaaaaacctacagtgccgagcaatacctt
cgcagcgaagaggaaatgtgtgcgctgtttagcgacattccttcggccttaagtaactca
gttgaaatcgccaagcgttgtaatgtcaccatacgcttgtatgagtacttcctgcctaat
tttcccacaggggatttatccactgaagactttttggtggtggtgtccgaaaagggcctt
gaggagcggctggaatttttattcccagatgagcaagtgcgcgcccaaagacgcggcgag
tatgatgagcgattagccattgagctcaaagtgattaaccagatgggattcccaggttac
ttccttatcgtgatggagtttatccaatggggtaaagacaacggcattccagtgggccca
ggtcgtggttcgggtgcaggctccttggtggcttatgcccttaaaattactgaccttgac
ccgttagagtttgacttgctgttcgagcgcttcttaaaccctgagcgtgtctccatgccc
gactttgacgtcgacttctgcatggacaggcgcgatgaagtgatagaccacgtggccgac
ttgtatggccgcgaagctgtgtcgcaaatcattaccttcggtaccatggccgctaaagct
gtggtgcgggatgtgggtagggtgcttgggcacccctatggtttcgtcgatagaatttca
aagcttatcccagcagagcctgggatgacgttagcaaaagcctttgaagtagaaccggct
ctgcaagagtcctatgatggcgatgaagatgttaaagagctcatcgacatgtgtcgccgc
cttgaaggcgtgactcgtaacgccggtaaacatgctgggggcgtggttatcgcgcccaca
aagataaccgacttctcgccgctgtattgcgacgccgaaggcaataaccctgtgacccag
ttcgataaaaacgacgttgaaacggcgggtctagtcaaattcgacttcttgggtcttcga
accttaaccatcatcgactgggcgcttgagatggttaacaaggtgcaattgcaaaatggc
ttagatcccattcgcatcgaagccattcctctggacgatcctaagtgctttaaattattg
cagcgttacgaaaccactgcggtattccagcttgaatcccgcggcatgaaagatttgatc
aaacgtctgcagccggattgcttcgaagacatgattgctttggtggccctgttccgcccc
ggcccattgcagtccggcatggttgataactttatcgaacgtaagcacggccgtgaggaa
gtgtcttaccccgatgcccagtatcagcacgagtcattacgtgagctcttgtcacccacc
tacggcattattctctatcaagagcaggtgatgcagatagctcaggtgttatctggctat
accttaggtggcgccgacatgctgcgccgcgccatgggtaagaaaaaacccgaagaaatg
gccaagcagcgcggcacctttaaggaaggggcgataaacaacggtatcgatggcgagcta
tcgatgaaaatcttcgacttggtggaaaaattcgccggttacggtttcaacaagtctcac
tccgccgcctacgctttagtgtcttaccaaaccctgtggcttaagacgcatttccccgct
cagtttatggcggcggtgatgtccgcggatatggataacacagataaaatcgtcacctta
gtggatgagtgtgagcgcatgggcttgccgcttattcctccggatgtgaacaagggctta
tttaagtttactgtggatgaggcctttaatattgtctacggaattggcgccattaaaggc
gtgggtgaggggccggtggagtccattcttgaggccagagtgaatggaccttttaccgat
ttattcgatttttgtgctcgagtggatttgaagaaactcaataaacgtatcatcgaaaag
ctcatttgtgctggtgcgctggacagccttgggccgcaccgcgcctccatgatggcaacc
ttaccacaggccatcagcgccgcggcgcagcacgccaaagccgaggccataggtcagcac
gatatgtttggcttgctgaacagtgagcccgaagataacaaacaacagtttgtggaatgt
atgccttggccggataaaatctggctcgaaggtgagcgtgatactttaggcttgtacctg
acaggtcaccccatcaaccagtatttgaaagagcttaagcaatacacctcgggtcgatta
aaggacgtacaccccaccgagcgcggtaaaaccgccaaagcagcggggcttgtggtggca
acccgagtgatgctcaccaagcgcggcgccaagatggggctggtgactttagatgataag
agcgcgcggcttgaggtgatgttatttaccgaagcctttgagaagtttaatcatctgctg
gaaaaagatcgcatcttaatctgcgaaggcgaggtcagctatgatgattttgccggcggc
aatcgcatgacggcgcgcaatatcatcgacataggtgaggcaaggagtcattttgcccgc
gccgttgagcttaggttagcggcagagcgagtaccagatgaagcttggcttgagcaattt
aaagcgacccttgagccttggaaagggggcgctgtgcctgtggtgattgattatatgcaa
gaaggcacacgggcaagtttcaccttaggggcagcatggcaggtgaatcccagtgatgag
cttatgttagctctggagtccttgttaggctctgaaaatgttaaacttaaatttgattag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (20)   

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