KEGG   Shewanella denitrificans: Sden_1748
Entry
Sden_1748         CDS       T00344                                 
Name
(GenBank) ribosomal large subunit pseudouridine synthase F
  KO
K06182  23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
Organism
sdn  Shewanella denitrificans
Brite
KEGG Orthology (KO) [BR:sdn00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sdn03009]
    Sden_1748
Enzymes [BR:sdn01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.21  23S rRNA pseudouridine2604 synthase
     Sden_1748
Ribosome biogenesis [BR:sdn03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    Sden_1748
SSDB
Motif
Pfam: PseudoU_synth_2 S4
Other DBs
NCBI-ProteinID: ABE55032
UniProt: Q12NE4
Position
2069128..2070057
AA seq 309 aa
MTDSAIRLNKYISESGICSRRDADRYVEQGNVFINGRRAQVGDLVSIGDKVKVNGQDIEP
RDAENLVFIALNKPVGIVSTTEGSERDNIVDFVNHSSRIFPIGRLDKDSQGLIFLTNNGD
LVNKILRAGNNHDKEYVVTVNKPITDDFIKGMGAGVPILGVVTKKCVVEQVSPFAFKIVL
VQGLNRQIRRMCEYFGFEVTKLERQQIMNVSLKGLPIGEWRDLDKQELDVLFDMIKDSSS
EDKNAAAKKKPKPKPKVASLRDKIEGPEHFMQHNRSTKHKGQAKGQPKGQTKGQGKGKPG
GGRKPKASR
NT seq 930 nt   +upstreamnt  +downstreamnt
gtgacagactcagctattcgtcttaataaatacatcagtgaaagtggcatttgctcaaga
cgtgatgccgatcgttatgttgaacaaggcaatgtgtttattaacggcaggcgggctcag
gtgggcgatcttgtctctatcggcgataaagtcaaagtgaatggtcaagatattgagccc
agagatgctgagaatctagtttttattgcgcttaataagcctgtgggcatcgtcagcacc
acagaaggcagtgagcgggataacattgtggatttcgttaatcattcaagtcgtatcttc
cccattggccgtttagataaagattctcaagggctgatttttttgaccaacaatggcgat
ctggtcaacaaaatacttcgtgcgggtaataatcacgataaagaatatgtggttactgtg
aataagcccattaccgatgactttatcaaaggcatgggagctggcgtgcctatccttggc
gttgttaccaaaaagtgtgtcgttgaacaagtgtcaccctttgcgtttaaaatcgtgcta
gtgcaggggcttaaccgtcagatccgccgcatgtgtgaatactttggctttgaagtgacc
aaacttgaacgccaacaaattatgaatgtcagccttaaaggtctgccaataggggaatgg
cgtgatttagacaagcaagagttggatgtcttgtttgatatgatcaaagactcctcttca
gaagataaaaatgccgcagcaaaaaagaagcctaaacctaagcccaaagttgcatctctt
agagataaaattgaaggacctgagcactttatgcagcataaccgcagcactaaacataaa
gggcaagccaaaggccaacctaaaggtcaaactaaaggccaaggtaagggcaagcccggc
ggcggacgtaaacctaaagcatcacgttag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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