KEGG   Shewanella denitrificans: Sden_2302
Entry
Sden_2302         CDS       T00344                                 
Name
(GenBank) RNAse E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
sdn  Shewanella denitrificans
Pathway
sdn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sdn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sden_2302
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdn03019]
    Sden_2302
   03009 Ribosome biogenesis [BR:sdn03009]
    Sden_2302
Enzymes [BR:sdn01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     Sden_2302
Messenger RNA biogenesis [BR:sdn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Sden_2302
Ribosome biogenesis [BR:sdn03009]
 Prokaryotic type
  rRNA processing factors
   Sden_2302
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: ABE55582
UniProt: Q12LU4
Position
2725306..2728614
AA seq 1102 aa
MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVQEGQQVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMADLEVPNGMGLIVRTAGVGKEANEL
KWDLKVLQHHWDAIQEASQSQNAPFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEA
KQHIGLVRPDFVERVKLYESEVPLFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHICPRCHGQGTVRSTESLAL
SILRLMEEEAIKENTSQIEAIVPVDVAAFLLNEKRKAIRITEERHGVEVYIIPDEHMKTP
DYRVVRHRTDDEMTESSYKRVEAPLSKLYEPRKLERAAAPQPALKGFAAPQKAPDAPVKA
TPVVQSTQPGLVTRIIAGISALFSSPSKSAEPKAETKSTASESRPANNTRPRRSDGRSDS
RNDNRRSRNDSDSRNRNDADKNKDTRGRNKKTDKERNVRDADDKRPARTDNRNDSRTDKA
LKQEQPVQEAVESVEVKTEKTPKQEAARERRQRRNMRRKVRIENEQVTQDADLTSTDTAE
AVKTDAALNTPAAQVEPTPTQDTDKGSHLDQSASAKKSDDSESRNSRTRRQPRKEKAEQV
TSESSDEASAPSVATAEIPASDAGTVEPKQAVDVNAEQDDDAKEGRDGQRRSRRSPRHLR
AAGQRRRRDEDDTSQGAVFSSVDELEKQLNDEQNAIAAQKLNGEAQQAAPSAVEQAEVSN
AANNIEINDKAEAATETVTETANAEVKTQDVDTVASPVAEEKVEAKVEATTPAETQANTD
ASIEVATEVKAEVKAEVTATAEPAVVTETNNTDEAIKATKEASNASAPMAKPAIPARKAV
AQVAPALAPSSTEASTVSSAAAKPTGGSRFGTMVSSDMTKPVVHERSQQDTPKGREYDNT
ATEDATPKSKLGNSASSGMHRP
NT seq 3309 nt   +upstreamnt  +downstreamnt
atgaaacgtatgttaatcaatgcaactcaatctgaagagttgcgcgtagccctagttgat
gggcaacaactgtatgatttggatattgaaagcccaggtcacgaacagaaaaaatcaaac
atctacaaaggtaaaattacccgtgtagaaccctctctagaagcggcttttgtggactat
ggcgctgaccgtcacggtttcttgcccctcaaagaaattgcccgcgaatatttcccaaaa
ggttattcattccaaggtcgtcctaacatcaaagaagtggtgcaggaaggtcaacaagtt
atcgttcaaatcgataaagaagagcgcggtaataaaggtgcggcacttaccacctttatc
agtttagcgggttcttatttggtattaatgcctaacaaccctcgtgctggcggcatatct
cgtcgtatcgaaggtgatgagcgtaccgagcttaaagaagccatggctgatcttgaagtg
ccaaacggcatgggccttatcgtgcgcaccgccggcgttggcaaagaagccaatgagctt
aagtgggacttaaaagtacttcaacatcattgggatgctattcaagaagcatcccaatca
cagaatgctcctttccttattcatcaagaaagtaacgtcatagttcgcgctattcgcgac
tacttacgccgtgatgtgggcgaaatccttatcgatcatccccgtatttttgaagaagca
aaacaacacataggtttagtgcgtcctgatttcgttgagcgcgtaaagctttatgaatca
gaagtgccactatttactcacttccaaatcgaatctcagattgaatctgcattccaacgt
gaagtgcgcctgccatcgggcggctcaatcgtcattgacccaactgaagccttgacctct
atcgatatcaactcggcccgcgccactaaaggcggcgatatcgaagaaacagcacttaac
accaacctagaagctgccgatgaaattgcccgtcaattacgtctacgcgacttaggtggc
ctagtggttatcgattttatcgatatgaccccagttagacaccagcgtgaagttgaaaac
cgcatgcgtgatgctgtgcatcatgatcgtgctcgcgtgcaacttggccgcatttcacgt
tttggcttaatggaaatgtcgcgtcagcgtctgcgcccttctcttgaggaatcggcagca
cacatttgtccacgctgtcatggtcaaggtacggttcgtagtactgagtctctggcatta
tcgattttacgtttgatggaagaagaagccatcaaagaaaacacgtctcagatagaagcc
atagtgcctgttgatgtggccgccttcttattaaatgagaagcgcaaagctattcgcatc
acagaagagcgtcacggtgttgaagtgtacatcatccctgatgaacacatgaaaacgcca
gattaccgcgttgtgcgtcacagaactgatgacgaaatgacagaatctagctataagcgt
gttgaagccccgctatccaagctttatgaaccacgtaaacttgaacgcgcagctgcgccg
caacctgcacttaaagggtttgctgcaccgcaaaaagcccctgatgcccctgtaaaagca
accccagtagttcaaagcactcaaccgggtttagttacccgcatcatagccggcattagc
gccctgtttagctcaccaagcaagagcgcggagcccaaagctgaaactaaaagcaccgca
agcgaaagccgtcctgccaataacactcgtcctcgccgcagtgatggtcgcagtgatagc
cgcaacgacaaccgtcgcagccgcaatgatagcgacagccgcaaccgtaacgatgctgat
aagaacaaagacactcgtggccgcaataagaagactgataaagaacgtaacgttcgtgat
gcagacgacaagcgcccagcaagaactgataatcgtaacgatagccgcactgacaaggca
cttaagcaagagcagcctgttcaagaagccgttgaaagcgttgaagttaaaactgagaaa
acccctaagcaagaagcagcccgtgagcgtcgtcaacgccgcaatatgcgtcgcaaggtg
cgtattgaaaacgagcaagtgactcaagatgctgatctaacatcgactgacactgcagaa
gctgtcaaaaccgatgcagcgcttaacactccagctgcacaagtagagccgacgcctacg
caagatacagacaagggttcacaccttgaccagtctgccagcgccaagaaaagcgatgat
tcagaaagcagaaactcacgtactcgccgtcaacctcgtaaagagaaagccgagcaagtc
accagtgagtcaagtgatgaagcttcagctccttcggtagcgactgctgaaatcccagcg
agcgatgctggaacggttgaacctaagcaagctgtagatgtcaatgctgagcaagatgat
gacgctaaagaaggccgtgatggtcaacgccgtagccgtcgtagcccacgtcatcttcgc
gcagcaggccaacgccgtcgccgtgatgaagatgataccagccaaggcgcggtattctca
tcggttgatgagcttgaaaagcagctcaatgacgaacaaaatgccattgctgcccaaaag
ctcaatggtgaagcccagcaagctgcaccaagcgctgttgagcaggctgaagtaagcaat
gcagcaaacaacatcgagatcaatgacaaagcagaagctgccactgaaacagtgactgag
acagcgaacgctgaagtaaagactcaggatgtcgacactgtagcaagcccagtagcagaa
gagaaagttgaagctaaagttgaagcaacgacgccagctgaaactcaggctaatacagat
gcgtctattgaagtcgccactgaagttaaggctgaagttaaggctgaagtaactgcgacc
gcagaaccagcagttgtcactgaaaccaataacactgatgaagctattaaagcgacgaaa
gaggcctctaatgcctcggcacctatggctaagcctgcgattcctgcgcgtaaagccgtg
gcgcaagttgctccagctctggcaccttcaagcacagaagcaagtacggtaagcagtgcc
gctgctaagcctactggcggcagccgcttcggtactatggtcagttcagatatgactaaa
cctgttgttcatgaaagatcacagcaggatacgccaaagggccgtgaatacgacaataca
gctaccgaagacgcaacacctaagagtaaattaggtaatagtgcatcatcgggtatgcac
agaccgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

Download RDF
DBGET integrated database retrieval system