KEGG   Shewanella denitrificans: Sden_3381
Entry
Sden_3381         CDS       T00344                                 
Name
(GenBank) dihydrolipoamide dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
sdn  Shewanella denitrificans
Pathway
sdn00010  Glycolysis / Gluconeogenesis
sdn00020  Citrate cycle (TCA cycle)
sdn00260  Glycine, serine and threonine metabolism
sdn00280  Valine, leucine and isoleucine degradation
sdn00310  Lysine degradation
sdn00380  Tryptophan metabolism
sdn00620  Pyruvate metabolism
sdn00630  Glyoxylate and dicarboxylate metabolism
sdn00640  Propanoate metabolism
sdn00785  Lipoic acid metabolism
sdn01100  Metabolic pathways
sdn01110  Biosynthesis of secondary metabolites
sdn01120  Microbial metabolism in diverse environments
sdn01200  Carbon metabolism
sdn01210  2-Oxocarboxylic acid metabolism
sdn01240  Biosynthesis of cofactors
Module
sdn_M00009  Citrate cycle (TCA cycle, Krebs cycle)
sdn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
sdn_M00036  Leucine degradation, leucine => acetoacetate + acetyl-CoA
sdn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
sdn_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:sdn00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    Sden_3381
   00020 Citrate cycle (TCA cycle)
    Sden_3381
   00620 Pyruvate metabolism
    Sden_3381
   00630 Glyoxylate and dicarboxylate metabolism
    Sden_3381
   00640 Propanoate metabolism
    Sden_3381
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    Sden_3381
   00280 Valine, leucine and isoleucine degradation
    Sden_3381
   00310 Lysine degradation
    Sden_3381
   00380 Tryptophan metabolism
    Sden_3381
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    Sden_3381
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sdn04147]
    Sden_3381
Enzymes [BR:sdn01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     Sden_3381
Exosome [BR:sdn04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   Sden_3381
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 FAD_oxidored GIDA AlaDh_PNT_C HI0933_like FAD_binding_2 NAD_binding_8 FAD_binding_3 Thi4 DAO 3HCDH_N DUF2226 UDPG_MGDP_dh_N
Other DBs
NCBI-ProteinID: ABE56657
UniProt: Q12IR9
Position
complement(4031969..4033399)
AA seq 476 aa
MSNEIKTQVVVLGAGPAGYSAAFRAADLGLDTVIVERFSTLGGVCLNVGCIPSKALLHVA
KVIEEAKAVAAHGVVFGEPKIDLDKLRGFKEKVIGQLTGGLGGMSKMRKVNVVNGLGKFT
SPNTLEVTAEDGTVTVVTFEQAIIAAGSRPIKLPFIPHEDPRIWDSTDALELKEVPGKML
VMGGGIIGLEMGTVFASLGSKIDVVEMFDQVIPAADKDVIRVFTKKIKDKFNLMLETKVT
AVEAKEDGIYVTMEGKKAPSEPVRYDVVLVAIGRTPNGKLLEAEKAGVAVDERGFINVDK
QLRTNVPHIYAIGDIVGQPMLAHKGVHEGHVAAEVISGMKHYFDPKVIPSIAYTDPEVAW
VGLTEKEAKEQGIAYETATFPWAASGRAIASDASDGMTKLIFDKETHRVIGGAIVGVNGG
ELLGEIGLAIEMGCDAEDLALTIHAHPTLHESVGLAAEMYEGSITDLPNPKAKKKK
NT seq 1431 nt   +upstreamnt  +downstreamnt
atgagcaacgaaattaaaactcaggtagttgtattaggtgcgggtcctgcgggttattct
gcggcgtttcgtgcagcagacctaggcttagacactgtcattgttgagcgtttcagcact
ttaggtggtgtgtgtctaaatgttggttgtatcccttcaaaggctttattgcacgttgct
aaagtgattgaagaagctaaagccgttgctgcacacggcgtcgtgtttggcgagccaaag
attgatttagacaagttacgcggttttaaagagaaagtgattggccagttaaccggcgga
ttaggcggcatgtctaagatgcgtaaagttaacgtggttaacggtctgggtaaatttacc
agccctaacacccttgaagtgacggctgaagacggcacagtcactgtggtgactttcgag
caagccattattgctgcaggctcacgcccaatcaaactgccatttattccccatgaagac
ccacgtatttgggattcgactgacgccttagaactaaaagaagtaccaggcaagatgtta
gtcatgggtggcggtatcatcggcctagaaatgggcacagtgttcgcatcccttggcagt
aaaattgacgtggttgaaatgtttgaccaagttatcccagctgcagataaagacgttatt
cgcgtgtttactaagaagattaaagacaaatttaatcttatgctagaaaccaaagtgaca
gcggtagaagccaaagaagatggtatctacgtcactatggaaggcaagaaagccccaagc
gagccagtgcgttatgacgtagtgctagtggccattggccgtacgccaaatggcaagctc
ctcgaagccgaaaaagccggtgttgcggttgatgaacgtggtttcatcaatgtagacaag
caattacgtactaacgtaccgcacatctacgctatcggtgatatcgtgggtcaacctatg
ctggctcacaaaggcgtgcatgaaggccatgtggcggcagaagtgatttctggcatgaag
cattacttcgatccaaaagttatcccatcgattgcctatacagatccggaagttgcttgg
gttggtctgactgagaaagaagctaaagagcaaggtattgcttacgaaacggcgacgttc
ccatgggcagccagcggccgcgcaatcgcttcagatgccagcgatggcatgaccaagtta
attttcgacaaagagactcatcgcgttatcggtggtgctattgttggcgttaacggcggc
gagctattaggtgaaattggtttagccatcgaaatgggttgtgatgctgaagatttagcc
ttaaccatccatgctcacccaactctgcatgagtctgtaggccttgctgcagaaatgtat
gaaggttcgattaccgacttgcctaatcctaaggcaaaaaagaagaagtaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (23)   
   KEGG PATHWAY (16)   
   KEGG MODULE (7)   
Chemical substance (27)   
   KEGG COMPOUND (27)   
Chemical reaction (11)   
   KEGG ENZYME (1)   
   KEGG REACTION (10)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (16)   
   Pfam (16)   
All databases (85)   

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