KEGG   Sulfitobacter donghicola: SD1155_05470
Entry
SD1155_05470      CDS       T05893                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sdo  Sulfitobacter donghicola
Pathway
sdo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sdo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SD1155_05470 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sdo03021]
    SD1155_05470 (rpoC)
   03400 DNA repair and recombination proteins [BR:sdo03400]
    SD1155_05470 (rpoC)
Enzymes [BR:sdo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SD1155_05470 (rpoC)
Transcription machinery [BR:sdo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SD1155_05470 (rpoC)
DNA repair and recombination proteins [BR:sdo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SD1155_05470 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: QAV31046
Position
1123280..1126903
AA seq 1207 aa
MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFRDYYDKYPGQFVAKMGAEGIRDLLS
EIDLDEELKILRDELESATGQRLTRAIKRLEVVESFRNSGNDPAWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEEVIVEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGTIYNDTNEVLKAYANGYVHLHTRIGVH
ASSFNNPTFTEEQNKKILATSVGKIIFNEIIPDSFAYINEPTQTNLEGTTPDKYFVDPTE
LGEGGLKEFFETKELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI
TVGVSDIVVLPDKKDILDEHEKLVERVTKQFNRGLITEEERYNAVVEIWTDAKDQIQGEL
MQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETIRHPETDEIIIRPDELITAEIAKKITDAGIEQMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGENETRSYLASGTSRLKVEVGQ
SVERGEVLTEGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHNFTDANRDAFKERKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVQYDKNVAPVASSE
EEVEVTE
NT seq 3624 nt   +upstreamnt  +downstreamnt
ttgattgatgtaaataatttccattatatgaaaataggattagcttcacccgaaaagatt
cgttcatggtcttatggtgaagttaagaagcctgaaacaattaactatcgtacgttaaaa
cctgaaaaagacggtcttttctgtgaaagaatatttggaccaactaaagactgggaatgt
agttgcggtaaatacaaacgtgtacgctataaaggtatggtttgtgatagatgtggtgtt
gaagtaacgaagtctaaagttcgtcgtgaaagaatgggacacatcgaattagcagcacca
gtatcacacatttggtacttcaaaggtattccaagtcgtatgggacttttattagatatg
tctccaagagcattagaagaggttatttactttgcttcttatgttgttgttgatccaggc
ccaacaggtttagaaaagaaaactttattatctgaagcagaattcagagattattatgat
aaatatccaggtcaattcgtagctaaaatgggtgctgaaggtatcagagacttattatct
gaaattgacttagatgaagaactaaaaatcttacgtgatgaattagaatctgcaacagga
caaagacttactcgtgctattaaacgtttagaagttgttgaatcattccgtaactctggt
aatgatccagcatggatgattttagatgtacttcctatcattccacctgaaattcgtcca
atggttcaattagatggtggacgttttgctacaagtgacttaaacgatttatatagacgt
gttattaaccgtaataaccgtttgaaacgtttattagatcttggtgcaccaggtatcatt
gttcaaaacgaaaaacgtatgttacaagaagctgtagatgctttaatcgataatggtcgt
cgtggccgtcctgtaactggaccaggtaaccgcccattaaaatcattgtcacatatgtta
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactattcaggt
cgttccgttatcgcagtaggtccaagtctgaaaatgtatcaatgtggactacctaaagaa
atggcgcttgaattatttaaacctttcgttatgaaagagttagttcaacgtgaaattgca
acaaatatcaaaaatgctaaaagtaaaattgaacgcatggatgatgaagtttgggacgtt
ttagaagaagttatcgtagaacatccagtactacttaaccgtgcgcctacgcttcacaga
ttaggtatccaagcatttgaaccaacattagtagaaggtcgtgcaatccgtctacaccca
cttgttactacagcatataacgctgactttgatggtgaccaaatggcggttcacgttcca
ttatctaaagaagcgcaagctgaagcacgtatgttaatgttagctgctcaaaatatctta
aaccctaaagatggtaaaccagttgttacaccatctcaggatatggtattaggtaactac
tacttaacacttgaacgtaaagacgcagttaatactggtacgatctataatgatacaaac
gaagtattaaaagcttatgcaaatgggtatgttcacttacacactagaattggtgttcat
gcaagctcattcaataatccgacattcactgaggagcaaaataagaaaatcttagctaca
tcagtaggtaaaattatctttaatgaaatcattcctgattcatttgcttatattaatgag
ccaactcaaactaaccttgagggtacaacaccagataaatactttgttgatccaacagag
ttaggtgaaggcggattaaaagaattctttgaaactaaagaattaattgaaccattcaat
aaaaaattcttaggtaatatcattgctgaagttttcaacagattcagtattactgataca
tctatgatgcttgaccgtatgaaagacttaggattcaaattctcatctaaagcaggtatt
actgtaggtgtttctgatatcgtggtattaccagataaaaaagatatcctagatgaacat
gaaaaattagttgaacgtgtgactaaacaattcaatcgtggtttaatcactgaagaagaa
agatacaatgctgtcgttgaaatttggacagatgctaaagatcaaattcaaggtgaatta
atgcaatcacttgaaaaaacaaacccaatcttcatgatgagtgactctggtgcccgtggt
aacgcatctaactttactcagttagctggtatgcgtggattaatggctgcaccatcagga
aaaatcattgaattaccaatcacttcatcattccgtgaaggtttaacagtgttagagtac
ttcatttctactcacggtgcgcgtaaaggtcttgccgatacagcacttaaaacagctgac
tcaggttaccttactcgtcgtcttgttgacgttgcgcaagatgttattgtacgtgaagaa
gattgtggtactgaccgtggcttacttgtttctgacatcaaagaaggtacagaaatgatt
gaaccattcattgaacgtatcgaaggacgttattcaaaagaaacaattcgtcaccctgaa
acagatgaaattattattcgtccagacgaattaattactgcggaaatcgctaagaaaatt
actgatgctggtatcgaacaaatgtatatccgctcagcattcacttgtaatacacgtcat
ggtgtatgtgaaaaatgttatggtaaaaaccttgcaacaggtgaaaaagttgaagttggt
gaagcagttggtacaattgctgcccaatcaatcggtgaaccaggtacacagcttacaatg
cgtaccttccatacaggtggggtagccggaagcgatatcactcaaggtcttccacgtatc
caagagatctttgaagcccgtaaccctaaaggtcaagcggtaatcactgaaatcgaaggt
gtagtagaagatattaaattagcgaaagaccgtcaacaagaaattgttgttaaaggtgaa
aatgaaactagatcatatctagcttcaggtacttctagacttaaagtggaagtaggacaa
tcagttgaacgtggtgaagtattaacagaaggttctatcgagccgaaaaactacttatca
gttgctggtttaaatgctacagaaagctacttattaaaagaagtacaaaaagtttaccgt
atgcaaggtgttgaaattgatgataaacacgttgaggttatggttagacaaatgttacgt
aaagtgcgtatcatcgaagcaggagatactaagttattacctggttcattagttgatatt
cacaactttactgacgctaacagagatgcatttaaagaacgtaaacgccctgcaactgct
aagccagtattgcttggtattacaaaagcttctcttgaaacagaaagcttcttatctgca
gcttcgttccaagaaacaactcgtgttcttactgatgcagctattaaaggtaaacgcgat
gacttacttggtcttaaagaaaatgttattattggtaaacttatcccagctggtacaggt
atgagacgttatagtgacgttcaatacgataaaaatgtagcgccagttgctagttctgaa
gaagaagtagaagttactgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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