KEGG   Seriola dumerili (greater amberjack): 111217412
Entry
111217412         CDS       T05606                                 
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
  KO
K08131  collagen type IX alpha
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu04510  Focal adhesion
sdu04512  ECM-receptor interaction
sdu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    111217412 (col9a3)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    111217412 (col9a3)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    111217412 (col9a3)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:sdu00535]
    111217412 (col9a3)
Proteoglycans [BR:sdu00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   111217412 (col9a3)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 111217412
NCBI-ProteinID: XP_022594992
Position
Unknown
AA seq 678 aa
MAVFSALWVLLLCQLLTSSSAQRPGPRGAAGPPGPPGPPGRDGTDGKPGPSGLPGKAGPK
GKAGIPGSPGKPGLPGLPGVDGLTGPDGPAGKDGPPGEAGESGPPGPPGPPGRGRPGAAG
LPGTNGLPGGVGPQGPVGAEGLPGLPGPPGPDGPPGLPGTLHDLNGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGEPGKDGEKGDAGPPGPPGIPGTVGLQGPRGLRGLQGPMGAVG
DRGLPGFRGKPGIAGIIGKTGDAGEKGPQGFRGPKGEIGKIGPKGGPGGAGPKGEPGIPG
RDGKDGTPGLDGEKGDAGRHGVVGEKGPNGLPGLQGKAGAKGSKGVVGDEGKAGETGPSG
EPGIPGEIGVPGERGIAGPRGVAGGIGPAGNPGPQGVKGYQGVKGALGDPGLPGPTGIRG
EFGDRGPVGASGAKGDMGVAGSDGLPGENGEPGPFGPVGQKGQPGKRGELGPKGVTGPQG
ELGARGPPGKQGPMGFQGEQGLPGIAGKNGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLAPGMVGRPGPAGSPGKPGVAGSIGHPGSRGPPGYRGLPGELGDPGPRGDVGESGDK
GPIGKAIDGPTGDQGYQGLPGVPGIVKDGRDGSPGDPGEPGEPGRVGRTGHQGPPGICDT
SACQGASVAGKSSNPKNH
NT seq 2037 nt   +upstreamnt  +downstreamnt
atggcggtgttctctgctctgtgggtgctcttactgtgccagcttttgacatcatcctca
gcccagaggccgggccccaggggagctgctgggccaccaggacccccaggaccaccggga
agggatggcactgatggcaaacctggaccttctggactgccagggaaagcaggtcccaaa
gggaaagcaggaataccaggatcaccaggaaaaccaggcctgccaggacttccaggggtg
gatggtttgacaggtcctgatggtcctgctgggaaggacggacccccaggggaagcaggt
gaatctggacctcctgggccacctggacctcctggcagagggagaccaggagctgcagga
ctacctggaaccaacgggttgccaggcggagttggaccccagggtccagtgggtgctgag
ggtcttccaggacttcccggacctcctggccctgatggacccccaggtcttcctggtact
cttcatgatcttaacggtgaccttctgtgtcctgcaatctgtccccctggtccctccggt
cctcctgggatgccaggattcaagggtcacacaggacataaaggagacaaaggagaacct
ggaaaagatggagagaagggtgatgctggaccacctggcccaccaggtattcctggcact
gtgggtctgcagggcccacgtggtctaagaggtttacagggcccgatgggagctgtagga
gacagaggtctgcctggtttcagaggcaaacctggcatcgccggcatcattgggaagaca
ggtgacgctggagaaaaaggaccacagggattcagaggacccaaaggagaaattggtaaa
attggtcccaaaggaggtccaggtggagcaggacccaaaggcgagcctggtattcctggc
agagacggcaaagatggtacaccaggattagatggcgagaagggtgatgctggacgccat
ggagtagttggagagaaaggaccaaacggccttcctggtctacaaggaaaggctggtgca
aagggatctaaaggagtagttggtgatgaagggaaggctggggagacaggaccttctgga
gagccaggtattcctggtgagattggcgtcccaggagagagggggatagcaggacccaga
ggagtggctggaggtattggaccagcgggcaaccctgggccccagggagtgaaaggctac
cagggggtaaaaggagccttgggggatccaggtcttccaggtccaacaggaatccgtgga
gagtttggtgataggggtccagttggagcttctggagctaaaggagacatgggtgtggca
ggaagtgacggtttacctggagagaacggagaacctggtccctttgggccagttggacaa
aaaggacagcccgggaaacggggtgaactgggacctaagggtgtgacaggcccacaagga
gagcttggtgcaagagggcctccaggaaaacaagggccaatgggcttccagggggaacag
ggtctgcctggaattgcaggaaagaacggtgtacctggtaaactggcaagtgagcagcac
atcagagagctgtgtggctcaatgattgatgatcagattgcacagctggccgctaacctt
cgaagacccctggcccctggaatggtgggccgcccgggccctgctgggtctccaggaaag
ccaggagttgctggctctattgggcatccaggttcccgtggaccaccagggtacagaggc
ctgccaggagaacttggagaccctggtcccagaggtgatgttggtgagtcaggcgataag
ggacccattggcaaagccattgatgggccaactggagaccaaggatatcaaggtcttcca
ggagtacctggaattgtcaaagatgggcgtgatggatctccaggagatccaggtgagcct
ggagagccagggagggtaggtaggactgggcaccagggacctcctggaatctgtgataca
tcagcctgccagggagcatcagtcgctgggaaatcctccaaccccaaaaaccattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (15)   

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