KEGG   Seriola dumerili (greater amberjack): 111222366
Entry
111222366         CDS       T05606                                 
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
  KO
K20179  vacuolar protein sorting-associated protein 11
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu04140  Autophagy - animal
sdu04148  Efferocytosis
sdu05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    111222366 (vps11)
   04148 Efferocytosis
    111222366 (vps11)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    111222366 (vps11)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sdu04131]
    111222366 (vps11)
Membrane trafficking [BR:sdu04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    111222366 (vps11)
   Hops complex
    111222366 (vps11)
SSDB
Motif
Pfam: Clathrin VPS11_C zf-C3HC4_2 zf-rbx1 zf-C3H2C3 zf-RING_2 zf-C3HC4 zf-ANAPC11 zf-RING_5 ADIP zf-RING-like TSGP1 DUF6543 Kbp-5
Other DBs
NCBI-GeneID: 111222366
NCBI-ProteinID: XP_022601798
Position
Unknown
AA seq 926 aa
MAAFLQWRKFVFFDKDTVKDPVDSGKNFVLPSGISACDSGRGHIVLGDMDGKIWLMTRSL
QLTYFQAYKLRVTHLYQLKQHSILISVGQDEQGINPLVKVWNLDKRDSGNPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGSSPVTGLAFR
QVAKVTHLFVATLERVHCYTLSIKEYPKVELDTHGCALRCSSLADPSQDSQFIVAGDECV
YLYQPDERGPCFAFDGHKLLAHWHRGYLFLLIRDAKSPNKTGFGNRESSPSDKQLLTIYD
LDNKFIAYSASFDDVIDVVAEWGSFYILTRDGKMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRQYGDHLYLKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKSSDSEVHFDVEIAIKVLRQA
GYHSHAVFLAEKHMHHEWYLKIQLEDLKNYQEGLRYIGRLPFDQAESTMKHYGKTLMLHV
PEDTTLLLKGLCTNYHPSGDGPEKDSPERSRVNKANSEEFIPIFANNPRELKAFLEHMIE
VDPCSPQGVYDTLLELRLQDWAHEQDPQRKRVLQGEAVSLLRSDNTVFDKALVLCQMHNF
KEGVLYLYEKGKLYQQIMHYHMQNEEYGKIVEACKRYGDQEGCLWEQALGYFARKEEDCK
AYISEVLHHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLINKLQRESQQIEDDERKIRQ
YREETAHLRSEIQELKTSAKIFQKTKCNMCNSPLELPSVHFLCSHSFHQHCFESYAESEA
ECPTCTPENRKVMDMLRAQDQKRDLHDHFNRQLRSSNDGFSVVADYFGRGVFNKLTLVTD
LPGNKTAGSLEGNLQKDLLIHTKRNC
NT seq 2781 nt   +upstreamnt  +downstreamnt
atggcagcattcttacagtggagaaaatttgtcttctttgataaagatacggtgaaggat
cctgtggatagtgggaaaaactttgttcttccaagcggaatatcggcgtgtgactccggc
cggggtcatattgttctcggagatatggatggcaagatctggcttatgacacgctccttg
cagttgacatattttcaggcctacaagttgcgggtaacacacctttatcagctgaagcag
cacagcatccttatatcagttgggcaggatgaacaaggaataaaccctcttgtaaaggtc
tggaacctagacaagagagacagtggaaatcctctctgcacaaggatttttcctgcaatt
cctggcaacaaaccgactgaagtgtcttgcctcagtgtacatgagaacctcaacttcatg
gccattggcttcacagatggcagtgtggttttgaccaaaggtgacatcaccagagatcgc
cacagtaaaactctgactttacatgagggaagcagcccagtcaccggcctcgccttccgc
caagtggcaaaggtcacgcatctgtttgttgccactctggagagggtccattgttacacc
ctgtccatcaaggagtatcctaaagtagagctggatacacacggctgtgcactgcgctgc
tcctccctagcagatccctctcaggattcccagttcattgtggctggtgatgaatgcgtg
tacctgtatcaacctgatgagcgagggccctgctttgccttcgatggacacaagttgttg
gctcactggcaccgtggatatctgtttttacttatcagagatgcaaagtcacccaacaag
acagggtttggtaacagggagagctctccatcagacaaacagcttctgactatctatgac
ctggacaacaagttcatcgcctacagtgcctcttttgatgatgtcattgatgtcgtagca
gagtggggctccttctacatcctaaccagagatggaaaaatgtttgttcttcaggagaaa
gacacgcagaccaaactggagatgctgtttaaaaagaatctgtttgtgatggccataaac
ctggctaagagccaacacctggacagtgacggcctgtcagagatcttcaggcagtacggt
gatcacctctaccttaaaggagaccacgatggtgccatccagcagtacattcgcaccatt
gggaaattggagccatcatacgtaatcaggaaattcctagatgcacagaggatccacaac
ctgacagcatatctgcaagccttgcacagacagtccctggctaatgcagaccacaccaca
ctgctgctgaactgttacacaaagctgaaggacagctccaagctggaggagttcattaag
agtagtgatagtgaggtccactttgatgttgagattgccatcaaagttcttcggcaggcc
ggctaccatagccacgctgttttcttggctgagaaacacatgcaccatgaatggtacctg
aagatccagcttgaagacctcaagaactaccaggaaggactccgttacattggacgtctg
ccttttgatcaagcggagagcaccatgaagcattatggcaagacactcatgctccatgtt
cctgaagacaccacgctactcctgaagggcttatgcaccaactaccatcccagtggagat
ggtcctgaaaaagacagcccagagaggagtcgggtcaataaggccaactctgaggaattc
atcccaatttttgccaacaacccccgggagttgaaagctttcctggagcacatgatcgag
gtggatccctgttctccccagggtgtgtatgacacactactggagctccgtctgcaagac
tgggcacatgaacaggacccacagagaaaaagggtcctgcagggggaagctgtgtcactg
ttgaggagtgacaacactgtgtttgataaggccctggtcctctgccagatgcacaacttc
aaagaaggtgtcctctacctctatgagaagggcaaactctaccagcagatcatgcactac
cacatgcagaacgaggagtatgggaaaattgtagaggcctgtaagcgctatggggaccaa
gagggttgcctttgggagcaggcactgggctactttgccagaaaagaagaagactgcaag
gcctacatcagtgaggtcctacatcacattgaccaaaacaacctgatgcctccattactt
gtggtgcagacactggcacacaactcgacggccactctctcagtcatcaaggactacctc
atcaacaaactgcaaagggagagccagcagatagaggatgatgaacgcaagatccgccag
taccgcgaagaaacagctcatctccgttctgagatccaggagctcaaaaccagtgccaag
atattccagaagaccaagtgcaacatgtgcaacagtcccctggagctgccgtctgttcat
ttcttgtgcagccactctttccaccaacactgtttcgaaagctatgcagagagtgaggct
gagtgcccaacgtgcactccagagaaccgcaaagtcatggacatgctgcgtgcccaggac
cagaaacgcgacctgcatgaccacttcaacagacagttacgcagctctaatgatggcttc
tcagttgtggccgactattttggacgaggagtgtttaacaaactgactctggtcaccgac
ctgcccggcaacaaaactgctgggagtctagaaggcaatctgcaaaaagaccttctcatc
cacaccaagagaaactgctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (14)   
   Pfam (14)   
All databases (28)   

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