KEGG   Seriola dumerili (greater amberjack): 111228007
Entry
111228007         CDS       T05606                                 
Symbol
top3b
Name
(RefSeq) DNA topoisomerase 3-beta-1
  KO
K03165  DNA topoisomerase III [EC:5.6.2.1]
Organism
sdu  Seriola dumerili (greater amberjack)
Pathway
sdu03440  Homologous recombination
sdu03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:sdu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    111228007 (top3b)
   03460 Fanconi anemia pathway
    111228007 (top3b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdu03032]
    111228007 (top3b)
   03400 DNA repair and recombination proteins [BR:sdu03400]
    111228007 (top3b)
Enzymes [BR:sdu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     111228007 (top3b)
DNA replication proteins [BR:sdu03032]
 Eukaryotic type
  DNA Topoisomerases
   111228007 (top3b)
DNA repair and recombination proteins [BR:sdu03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    Bloom's syndrome complex (BTR)
     111228007 (top3b)
   FA (Fanconi anemia) pathway
     111228007 (top3b)
SSDB
Motif
Pfam: Topoisom_bac Toprim
Other DBs
NCBI-GeneID: 111228007
NCBI-ProteinID: XP_022609496
Position
Unknown
AA seq 858 aa
MRTVLMVAEKPSLAQSISKILSKGTCTSRKGLNGACSVHEYTGSFQGQSVRFKMTSVCGH
VMSLDFIGKYNNWDKVDPAELFSKAPTEKKEANPKLNMVKFLQVEARGCDYVVLWLDCDK
EGENICFEVLDAIQPVMNKGSVRERSVYRAKFSSITDTDIWNAMNCLGEPNCNEALSVDA
RQELDLRIGCAFTRFQTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETY
WIIQAKVFKGKDSPLTLDWNRVRVFDREVGQMFVNLAKTSREAQVESVSKKEKTKQRPQA
LNTVEMLRVASSALGMGPQHTMQIAERLYTQGYISYPRTETTHYPENFDLKGTLKQQTNN
IIWAEEVKALLLTGLNRPRKGTDAGDHPPITPMRAASEGELGSDGWRLYEYITRHFIATV
SQDCKYLQTTIEFSIGPEAFSCSGKTLISPGYTALMPWQGIPLEEAMPDCERGDIFTVDE
IKLVEKQTSPPDYLTEAELITLMEKHGIGTDASIPVHINNICQRNYVTIENGRKLKPTNL
GIVLVHGYHKIDSELVLPTIRSAVEKQLNLIAQGKANYQQVLQHTLDIFKRKFHFFVDSI
TSMDELMEVSFSPIAASGKPLSRCGKCHRFMKYIQAKPSRLHCSHCDETYSLPQNGAIKL
YKELRCPLDEFELVLWTSGARGKSYPLCPYCFSNPPFRDMKKGMGCNECTHPSCQHSLNS
LGIGQCVECDGGVLVLDPTSGPKWRMACNKCNVVVHFFEHAHRVQVAQETCDACDASLVA
VDFNKTRTPLPASETQHTGCVFCDPVFQDLVELKHATMRHFMHRGGGARRGGRGRGRGRR
GNPKKPKDKMAALAAYFV
NT seq 2577 nt   +upstreamnt  +downstreamnt
atgaggaccgttttgatggtggcagagaaaccatcactggctcagtcgatttccaaaatc
ctctctaaaggaacctgtacaagtcgcaaagggctcaatggagcatgctcggtgcacgaa
tacacaggcagcttccagggccaatctgtacgctttaagatgacttctgtttgtggacat
gtgatgagtctggatttcattgggaaatacaacaactgggacaaggtggaccctgcagaa
ctcttcagcaaagctcccacagaaaagaaggaagccaaccccaaactcaacatggtcaag
ttcctccaggttgaagcacgaggctgtgactacgtggttttatggttggactgtgataaa
gaaggcgagaacatctgttttgaggtattagatgccatccagccagtgatgaacaaggga
agtgtgagggagcggagtgtttatcgtgccaaattcagctccattactgacactgacatc
tggaatgccatgaactgcctgggagagcccaactgcaatgaagcactgtcagtggacgca
cgacaggagctggatctgcgcatcggttgtgcattcacccggttccagacaaagtatttt
cagggcaaatacggcaatctagactcctccttgatctcctttggaccatgccagaccccc
acactaggcttctgtgtggaacgccatgacaaaatccagtccttcaaaccagagacttac
tggatcatccaagccaaggtgttcaaaggaaaggacagcccactgacactggactggaac
agggtgagggtcttcgacagagaggtgggtcagatgtttgtcaacctggccaagacatcc
agggaggcccaggtggagtcagtgagtaagaaagagaagaccaagcagaggccccaggcc
ttgaacacagtggagatgttgagagtggccagctctgctttaggcatgggaccccagcat
accatgcagattgcagagcgcctgtacacacagggctacatcagctacccacgtactgag
acaacccactacccagagaactttgaccttaaaggaacactgaagcagcagaccaacaat
ataatatgggcagaagaggtgaaggctctgcttttaactggattaaaccgacccaggaaa
ggaactgatgctggagaccatccacctatcactcccatgcgagctgcctcagaaggagaa
ctgggcagcgatggttggcggctgtatgagtacatcacacgacatttcattgccactgtc
agtcaggactgcaagtacctacagaccaccattgagttcagcattggcccagaggccttc
tcctgtagtggcaaaaccctgatatcaccagggtacacagcactgatgccctggcagggt
atccctctggaagaggccatgccagactgtgagcgtggcgacattttcacagtagacgag
atcaagctggtggaaaagcaaaccagccccccagattacctcaccgaggccgaactcatc
accctcatggagaaacatggcattggtactgatgccagcatccctgtccacatcaacaac
atctgccagaggaactatgttacaatagaaaatggacgcaagttgaagccaaccaacctg
ggcattgtcctggtgcatggctaccacaagatagactcagagctggttctgcccaccata
cgcagtgctgtagagaagcaactgaaccttattgcacagggtaaagccaactaccaacag
gtgttgcagcatacactggatatcttcaagaggaagtttcacttctttgtggattccatc
accagcatggatgagttgatggaggtctccttttctcccattgctgcctcaggaaagccc
ctgtctcgctgtggcaagtgccaccgcttcatgaagtacattcaggccaagcccagcagg
ctccattgctcccactgtgacgagacctacagtcttccacagaatggagccatcaagctg
tacaaggagctgcgctgtccactggatgagtttgagcttgtgctgtggacctctggagcc
cggggcaagagctaccccctgtgcccttactgctttagcaacccgccttttagggacatg
aaaaaaggtatgggatgcaatgaatgtactcatccgtcctgtcagcactctctcaactct
ttgggcattggacagtgtgtggagtgtgatggtggagtgttagtgctggatcccacctct
ggaccaaaatggagaatggcctgtaataaatgcaacgtggtggtacacttctttgaacat
gcacacagagtgcaggttgctcaggagacctgcgatgcctgcgacgcctctctggtcgca
gttgacttcaacaagacacgcactccacttcctgccagcgagacccaacacaccggctgt
gttttctgtgatccggttttccaggatctggtggagcttaaacatgccaccatgaggcac
ttcatgcatcggggtgggggtgcaagacgaggaggacggggacgaggcaggggacgccgt
ggcaatcctaaaaaacctaaagacaaaatggctgccctggcagcatacttcgtatag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (18)   

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